Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq185925 114 3e-20
seq155098 114 3e-20
seq66256 113 1e-19
seq87282 98.7 2e-15
seq2452699 86.0 1e-11
>seq185925
Length=7279
Score = 114 bits (126), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| | || ||||||| ||| || ||||| || || ||||| |
Sbjct 290 CCACCATGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 349
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363
| || |||| ||||| | ||| || || || ||||| | | |||| | || |
Sbjct 350 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGA--- 406
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||| ||||||||||| || || || || |||||||| | ||| | |||
Sbjct 407 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCG 466
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| |||||||| ||||| ||||| | ||| ||||||||
Sbjct 467 ACCTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCAT 516
>seq155098
Length=7669
Score = 114 bits (126), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| | || ||||||| ||| || ||||| || | ||||| |
Sbjct 7211 CCACCAAGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGAC 7270
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363
| || ||| | ||||| | ||| || || || |||||||| |||| | || |
Sbjct 7271 AAAGTACGTTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGA--- 7327
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||| ||||||||||| || | || || |||||||| | ||| | |||
Sbjct 7328 GGAATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCG 7387
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| |||||||| ||||| ||||| || || ||||||||
Sbjct 7388 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437
>seq66256
Length=6617
Score = 113 bits (124), Expect = 1e-19
Identities = 142/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || || || | || ||||| || ||||| | || || | || |||
Sbjct 1607 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAAG 1548
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | || || ||||| ||||||||||| || || ||||||||
Sbjct 1547 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1488
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | ||||| || || ||||| ||||| |||||||| ||||| |||
Sbjct 1487 TCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1428
Query 288463 AATATCTGCATTATG 288477
|| || |||||| ||
Sbjct 1427 AAGATTTGCATTTTG 1413
>seq87282
Length=9775
Score = 98.7 bits (108), Expect = 2e-15
Identities = 117/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTC 288374
||||||||| | ||| || || || ||||||| | ||||| | || ||||||
Sbjct 2591 TCCGTCTTCCAGTTGCTTGCCAGCATAGATCAGTCTTTGTTGGTCAGGAGGAGCTCCTTC 2532
Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434
|||||||||||| || || || || |||||||| | ||| | ||||| || || ||
Sbjct 2531 TTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGT 2472
Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||| |||||| | ||||| ||||| | ||| ||||||||
Sbjct 2471 GATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 2433
>seq2452699
Length=160
Score = 86.0 bits (94), Expect = 1e-11
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || ||||| ||||||||||| || || ||||| || || || | || || | ||
Sbjct 132 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCC 73
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| |||||||| ||||| ||||| ||||||||
Sbjct 72 ACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1132973650245458
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |