Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq185925 114 3e-20 seq155098 114 3e-20 seq66256 113 1e-19 seq87282 98.7 2e-15 seq2452699 86.0 1e-11 >seq185925 Length=7279 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 290 CCACCATGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 349 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || |||| ||||| | ||| || || || ||||| | | |||| | || | Sbjct 350 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGA--- 406 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||||||| | ||| | ||| Sbjct 407 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCG 466 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| ||||| ||||| | ||| |||||||| Sbjct 467 ACCTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCAT 516 >seq155098 Length=7669 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || ||||| || | ||||| | Sbjct 7211 CCACCAAGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGAC 7270 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||| | ||||| | ||| || || || |||||||| |||| | || | Sbjct 7271 AAAGTACGTTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGA--- 7327 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || | || || |||||||| | ||| | ||| Sbjct 7328 GGAATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCG 7387 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||| ||||| || || |||||||| Sbjct 7388 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437 >seq66256 Length=6617 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || | || ||| Sbjct 1607 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAAG 1548 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 1547 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 1488 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | ||||| || || ||||| ||||| |||||||| ||||| ||| Sbjct 1487 TCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 1428 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 1427 AAGATTTGCATTTTG 1413 >seq87282 Length=9775 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTC 288374 ||||||||| | ||| || || || ||||||| | ||||| | || |||||| Sbjct 2591 TCCGTCTTCCAGTTGCTTGCCAGCATAGATCAGTCTTTGTTGGTCAGGAGGAGCTCCTTC 2532 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 |||||||||||| || || || || |||||||| | ||| | ||||| || || || Sbjct 2531 TTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGT 2472 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| |||||| | ||||| ||||| | ||| |||||||| Sbjct 2471 GATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 2433 >seq2452699 Length=160 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| ||||||||||| || || ||||| || || || | || || | || Sbjct 132 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCC 73 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 72 ACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1132973650245458