Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq197607 129 7e-25
seq2976925 95.1 1e-14
seq356191 95.1 1e-14
>seq197607
Length=1217
Score = 129 bits (142), Expect = 7e-25
Identities = 286/422 (68%), Gaps = 24/422 (6%)
Strand=Plus/Minus
Query 10742 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 10801
|||| ||||||||||| | | || ||| || | || ||| || || || |||
Sbjct 663 ATCTGTTCGCGACCGCGGATATCCGGCAGGCCAACCACAACCTGACGGTCGAAACGGCCT 604
Query 10802 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 10861
|| || || | || |||||| | ||| ||||| ||||| |||||||| | ||||
Sbjct 603 GGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGTCGCGGCGATGACGATGATG 544
Query 10862 CCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGC 10919
||||| || || || ||||| ||||||||| || | ||| |||| ||| || ||||
Sbjct 543 -CCGTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATTGGTTGAGGGTCTGCTCGC 486
Query 10920 GTTCATCATTCGCGGGCATACCACCC------GCACTGCGTTGCTTACCGACGGCGTCAA 10973
| ||||||| | ||||||| || | ||| || ||| ||||| || |
Sbjct 485 GCTCATCAT------GACCACCACCCATGCCGGCGCCGCGATGGCGACCCACGGCATCGA 432
Query 10974 TTTCATCGATGAAAACGATACACGGT---TGATTTTCACGGGCAACTTCAAAGATATCTC 11030
|||| |||||||| | ||| |||||| || || | ||| ||| || ||||| |
Sbjct 431 TTTCGTCGATGAAGATGATGCACGGTGCGTGCTTCT---TGGCCTGTTCGAACATATCGC 375
Query 11031 GGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-G 11089
| || | ||||||| ||||| || |||||||| ||||| | | ||||| || | |
Sbjct 374 GAACACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGAACCGGAA-ATGGTG 316
Query 11090 ATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCA 11149
| ||| || || |||| |||||| || || || ||| || | ||| || || || ||
Sbjct 315 AAGAACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGGTTTTACCGGTACCC 256
Query 11150 GG 11151
||
Sbjct 255 GG 254
>seq2976925
Length=544
Score = 95.1 bits (104), Expect = 1e-14
Identities = 185/266 (70%), Gaps = 8/266 (3%)
Strand=Plus/Minus
Query 10738 CAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCG 10797
|| ||||| ||||||||||| | | || | | || || || ||| ||||| ||
Sbjct 262 CAGAATCTGTTCGCGACCGCGGATATCCGGCAAGCCAACCACGACCTGACGGTCAAAACG 203
Query 10798 ACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAAC 10857
|||||| || || || || ||| || | ||| ||||| ||||| || ||||| |
Sbjct 202 ACCTGGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTTAGTCGCAGCAATGACGAT 143
Query 10858 GATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGT 10915
|||||| ||| || || || ||||| |||||||| || | || |||| ||| |||
Sbjct 142 GATGCC-GTCATTCATT-TCGAAGCCGTCCATCTCCACCAGCAACTGGTTGAGGGTCTGT 85
Query 10916 TCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAA 10973
|| || ||||| | || || ||| || |||| || || ||| || ||||| |
Sbjct 84 TCACGCTCATCGTGACCGC-CAC-CCATGCCAGCACCACGATGGCGACCAACAGCGTCGA 27
Query 10974 TTTCATCGATGAAAACGATACACGGT 10999
||||||||||||| | ||| ||||||
Sbjct 26 TTTCATCGATGAAGATGATGCACGGT 1
>seq356191
Length=1159
Score = 95.1 bits (104), Expect = 1e-14
Identities = 185/267 (69%), Gaps = 10/267 (4%)
Strand=Plus/Plus
Query 10738 CAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCG 10797
|| ||||| ||||||||||| | | || ||| || | || ||| ||||| ||
Sbjct 283 CAGAATCTGTTCGCGACCGCGGATATCCGGCAGGCCAACCACCACCTGACGGTCAAAACG 342
Query 10798 ACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAAC 10857
|||||| || || || || ||| | | ||| |||||| ||||| || ||||| |
Sbjct 343 ACCTGGACGCAGCAGCGCAGGGTCCAATACGTCAGGGCGGTTAGTCGCAGCAATGACGAT 402
Query 10858 GATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGT 10915
|||| ||||| || || || ||||| ||||||||| | | || |||| ||| ||
Sbjct 403 GATG-CCGTCATTCATT-TCGAAGCCGTCCATCTCAACTAGCAACTGGTTGAGGGTCTGC 460
Query 10916 TCGCGTTCATCAT--TCG-CGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCA 10972
|| || ||||| | || || ||| ||| |||| || || ||| || |||||
Sbjct 461 TCACGCTCATCGTGACCGCCGCCCATGCCA---GCACCACGATGGCGACCAACAGCGTCG 517
Query 10973 ATTTCATCGATGAAAACGATACACGGT 10999
|||||||||||||| | ||| ||||||
Sbjct 518 ATTTCATCGATGAAGATGATGCACGGT 544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574291935443880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |