Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq197607 129 7e-25 seq2976925 95.1 1e-14 seq356191 95.1 1e-14 >seq197607 Length=1217 Score = 129 bits (142), Expect = 7e-25 Identities = 286/422 (68%), Gaps = 24/422 (6%) Strand=Plus/Minus Query 10742 ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 10801 |||| ||||||||||| | | || ||| || | || ||| || || || ||| Sbjct 663 ATCTGTTCGCGACCGCGGATATCCGGCAGGCCAACCACAACCTGACGGTCGAAACGGCCT 604 Query 10802 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 10861 || || || | || |||||| | ||| ||||| ||||| |||||||| | |||| Sbjct 603 GGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGTCGCGGCGATGACGATGATG 544 Query 10862 CCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGC 10919 ||||| || || || ||||| ||||||||| || | ||| |||| ||| || |||| Sbjct 543 -CCGTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATTGGTTGAGGGTCTGCTCGC 486 Query 10920 GTTCATCATTCGCGGGCATACCACCC------GCACTGCGTTGCTTACCGACGGCGTCAA 10973 | ||||||| | ||||||| || | ||| || ||| ||||| || | Sbjct 485 GCTCATCAT------GACCACCACCCATGCCGGCGCCGCGATGGCGACCCACGGCATCGA 432 Query 10974 TTTCATCGATGAAAACGATACACGGT---TGATTTTCACGGGCAACTTCAAAGATATCTC 11030 |||| |||||||| | ||| |||||| || || | ||| ||| || ||||| | Sbjct 431 TTTCGTCGATGAAGATGATGCACGGTGCGTGCTTCT---TGGCCTGTTCGAACATATCGC 375 Query 11031 GGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-G 11089 | || | ||||||| ||||| || |||||||| ||||| | | ||||| || | | Sbjct 374 GAACACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGAACCGGAA-ATGGTG 316 Query 11090 ATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCA 11149 | ||| || || |||| |||||| || || || ||| || | ||| || || || || Sbjct 315 AAGAACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGGTTTTACCGGTACCC 256 Query 11150 GG 11151 || Sbjct 255 GG 254 >seq2976925 Length=544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/266 (70%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 10738 CAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCG 10797 || ||||| ||||||||||| | | || | | || || || ||| ||||| || Sbjct 262 CAGAATCTGTTCGCGACCGCGGATATCCGGCAAGCCAACCACGACCTGACGGTCAAAACG 203 Query 10798 ACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAAC 10857 |||||| || || || || ||| || | ||| ||||| ||||| || ||||| | Sbjct 202 ACCTGGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTTAGTCGCAGCAATGACGAT 143 Query 10858 GATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGT 10915 |||||| ||| || || || ||||| |||||||| || | || |||| ||| ||| Sbjct 142 GATGCC-GTCATTCATT-TCGAAGCCGTCCATCTCCACCAGCAACTGGTTGAGGGTCTGT 85 Query 10916 TCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAA 10973 || || ||||| | || || ||| || |||| || || ||| || ||||| | Sbjct 84 TCACGCTCATCGTGACCGC-CAC-CCATGCCAGCACCACGATGGCGACCAACAGCGTCGA 27 Query 10974 TTTCATCGATGAAAACGATACACGGT 10999 ||||||||||||| | ||| |||||| Sbjct 26 TTTCATCGATGAAGATGATGCACGGT 1 >seq356191 Length=1159 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/267 (69%), Gaps = 10/267 (4%) Strand=Plus/Plus Query 10738 CAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCG 10797 || ||||| ||||||||||| | | || ||| || | || ||| ||||| || Sbjct 283 CAGAATCTGTTCGCGACCGCGGATATCCGGCAGGCCAACCACCACCTGACGGTCAAAACG 342 Query 10798 ACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAAC 10857 |||||| || || || || ||| | | ||| |||||| ||||| || ||||| | Sbjct 343 ACCTGGACGCAGCAGCGCAGGGTCCAATACGTCAGGGCGGTTAGTCGCAGCAATGACGAT 402 Query 10858 GATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGT 10915 |||| ||||| || || || ||||| ||||||||| | | || |||| ||| || Sbjct 403 GATG-CCGTCATTCATT-TCGAAGCCGTCCATCTCAACTAGCAACTGGTTGAGGGTCTGC 460 Query 10916 TCGCGTTCATCAT--TCG-CGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCA 10972 || || ||||| | || || ||| ||| |||| || || ||| || ||||| Sbjct 461 TCACGCTCATCGTGACCGCCGCCCATGCCA---GCACCACGATGGCGACCAACAGCGTCG 517 Query 10973 ATTTCATCGATGAAAACGATACACGGT 10999 |||||||||||||| | ||| |||||| Sbjct 518 ATTTCATCGATGAAGATGATGCACGGT 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574291935443880