Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq66256 132 5e-26
seq300236 118 1e-21
seq185925 116 4e-21
seq155098 116 4e-21
seq2409662 102 8e-17
seq2709013 91.5 1e-13
seq2452699 91.5 1e-13
>seq66256
Length=6617
Score = 132 bits (146), Expect = 5e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | ||| | ||||| || ||||||||||| | | ||||| | ||
Sbjct 1629 AAGGACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 1570
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| |||||||||| |||| | ||||||| ||||||||| || ||||| ||||| || ||
Sbjct 1569 TTCCAGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 1510
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| || ||| | || |||| || || || || | || | |||
Sbjct 1509 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGT 1450
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||||||||| || || ||||| |||||||||||
Sbjct 1449 CTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 1414
>seq300236
Length=7644
Score = 118 bits (130), Expect = 1e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || |||||||| || | | ||||||| | ||||| ||||| || ||
Sbjct 7610 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 7551
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || | || ||||||||| ||||| || || |||||||||||||| || |||
Sbjct 7550 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCTTTTTCTTGTATCTTCCCCTTG 7491
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || |||| || ||||| || | ||| | ||| || || || | ||
Sbjct 7490 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGTC 7431
Query 64427 TTTACGAAAATTTGCATT 64444
||||| || || ||||||
Sbjct 7430 TTTACAAAGATCTGCATT 7413
>seq185925
Length=7279
Score = 116 bits (128), Expect = 4e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
||| | ||||||||||| || || || |||||||||||||| || | | || | |
Sbjct 301 TCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCC 360
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
||||| || |||||||| ||| | || | | |||||||| |||||||||||||| ||
Sbjct 361 ATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 420
Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407
|| || || || ||||||| || | |||||| || || || || | ||| |
Sbjct 421 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTGAT 480
Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||||| || |||| || || | |||||| ||||| ||
Sbjct 481 GGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCATCTT 519
>seq155098
Length=7669
Score = 116 bits (128), Expect = 4e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
||| | ||||||||||| || || || ||||||||| |||| || | | || || |
Sbjct 7222 TCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTC 7281
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
||||| || |||||||| ||| | || || |||||||| |||||||||||||| ||
Sbjct 7282 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTT 7341
Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407
|| || || || ||||||| || | |||||| || || || || | ||| |
Sbjct 7342 ATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 7401
Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||||| || |||| || || || ||||| ||||| ||
Sbjct 7402 GGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 7440
>seq2409662
Length=152
Score = 102 bits (112), Expect = 8e-17
Identities = 100/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | ||||| ||||| || ||||||||||| | | ||||| | ||
Sbjct 15 AAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 74
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| ||||||||||||||| | ||||||| ||||||||| || ||||| ||||| || ||
Sbjct 75 TTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 134
Query 64351 TTGTATTTT 64359
|| || ||
Sbjct 135 CTGGATCTT 143
>seq2709013
Length=200
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | ||| | ||||||||||| | || || |||||||||||||| || |
Sbjct 4 ACCACCACGAAGTCTCAACACTAGATGAAGAGGGGACTCCTTTTGAATGTTGTAGTCAGA 63
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | ||||| || |||||||| ||| || || | |||||||| |||||
Sbjct 64 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAATGATCAGTCTTTGCTGGTCAGGAGG 123
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATC 64383
||||||||| || | || || || ||||||| || | ||||||
Sbjct 124 AATTCCTTCCTTACCCTGGATCTTGGCCTTTACATTTTCTATTGTATC 171
>seq2452699
Length=160
Score = 91.5 bits (100), Expect = 1e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365
|||| | ||||||| ||||||||| || ||||| ||||| || || || || || |||
Sbjct 160 GGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 101
Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| ||| | || |||| || ||||| || | ||| | |||||||||||||| ||
Sbjct 100 CACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGT 41
Query 64426 TTTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 40 CTTCACGAAGATCTGCAT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 480355319238840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |