Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq3087968 219 6e-52 seq2815131 98.7 1e-15 seq2955700 86.0 9e-12 >seq3087968 Length=6546 Score = 219 bits (242), Expect = 6e-52 Identities = 255/340 (75%), Gaps = 3/340 (1%) Strand=Plus/Minus Query 192079 GGCTTCGACGCTTGCTTGGCACGGATCTTCTCGATCTTGGTCCAGATGCGCGTGAGTTCG 192138 ||||| | || |||||||| || |||| ||| | ||||||||||||||||| |||||| Sbjct 2531 GGCTTTGTCGACTGCTTGGCGCGTATCTGCTCAACCTTGGTCCAGATGCGCGCCAGTTCG 2472 Query 192139 GTTTCGCCGTC-CTGATGCATGTCGCGACCCTGCGCCAAGCACAGCGCGGCCAGCGTAAC 192197 |||||| || ||| ||||| || | || |||| ||||||||||||||| || || Sbjct 2471 GTTTCGGCGGAGCTG-TGCATATCCAGGCCTGAAGCCAGGCACAGCGCGGCCAGAGTGAC 2413 Query 192198 CATGACCCCACCTACTTCCTGATACACTTCGCCAACTGGACGGCCGAACACGTAGTCCAC 192257 ||| || || || || ||||| | ||||| || || |||||| |||| || || || Sbjct 2412 CATCACGCCGCCGACCTCCTGCGATGGCTCGCCGACCGGGCGGCCGTACACATAATCAAC 2353 Query 192258 AAGCTGATGCGCTTCGCTGGCGGTGCAGCCACACGCTTGCACCAGCTCCAGGGCTTCTTC 192317 |||||| |||||||||||||||||||| || ||||||||||| || ||||| || Sbjct 2352 AAGCTGGTGCGCTTCGCTGGCGGTGCATTGGTTGGCCTGCACCAGCTCAAGCGCTTCCTC 2293 Query 192318 AAGGAAGCGATGGTTGCGTTCCACAACGTCCGCGGACACTGCGGGGCCGAAGCATTCCAT 192377 |||||| ||||||||||| || ||| |||| | || |||||||| |||| Sbjct 2292 AAGGAAACGATGGTTGCGCTCTTGGCGGTCGGCGGCAATCGCCTCTCCGAAGCAAGCCAT 2233 Query 192378 CATCCAGGGCTGGACTCGTGCCTGGAACGAGGGCTGGCTG 192417 |||||| ||||| || || | ||||||| | || ||||| Sbjct 2232 CATCCAAGGCTGTACGCGGGGTTGGAACG-GCGCGGGCTG 2194 >seq2815131 Length=243 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41390 ACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAAGACGTGTGG 41449 ||||||||| |||||||||||||| | || | ||| |||||||| ||| ||||||| Sbjct 1 ACGCTGGGTACCGGCAACCACTTCGTCGAGGTCTGCCTGGACCAGGAGCAGCGCGTGTGG 60 Query 41450 ATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCACTACATCGAG 41509 |||||||||| ||||||||| || || ||||| ||||||| ||| ||||||| Sbjct 61 TTCATGCTGCACTCCGGTTCGCGTGGCGTAGGCAATGCCATCGGCACCTACTTCATCGAG 120 Query 41510 CGTGCGCAGAAGGA 41523 | || || |||| Sbjct 121 CTGGCCAAGCAGGA 134 >seq2955700 Length=463 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40992 TCGCGTTGATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGGTGATCGCTA 41051 ||||| |||||||||| | |||| |||| || || | || || ||| | | Sbjct 409 TCGCGGTGATGCCGGATGTGCACCTGGGCAAGGGTTCGACCATCGGCAGCGTAATCCCCA 350 Query 41052 CGCAAGGTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGCATGGTGGCGG 41111 || || || || || |||||||||||||||||||||||||||||||| ||| | || | Sbjct 349 CGGTGGGCGCGATTATCCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGGATGATTGCCG 290 Query 41112 TTCGTACCAGTCTCAAGGCCAGTCAGTTGCCGGACAACCT 41151 || |||| || | ||||| | ||||| |||||||| Sbjct 289 CGCGCACCACGCTGACCGCCAGCGATTTGCCCGACAACCT 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711323597165400