Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_010811.2
Length=231255
Score E
Sequences producing significant alignments: (Bits) Value
seq3087968 219 6e-52
seq2815131 98.7 1e-15
seq2955700 86.0 9e-12
>seq3087968
Length=6546
Score = 219 bits (242), Expect = 6e-52
Identities = 255/340 (75%), Gaps = 3/340 (1%)
Strand=Plus/Minus
Query 192079 GGCTTCGACGCTTGCTTGGCACGGATCTTCTCGATCTTGGTCCAGATGCGCGTGAGTTCG 192138
||||| | || |||||||| || |||| ||| | ||||||||||||||||| ||||||
Sbjct 2531 GGCTTTGTCGACTGCTTGGCGCGTATCTGCTCAACCTTGGTCCAGATGCGCGCCAGTTCG 2472
Query 192139 GTTTCGCCGTC-CTGATGCATGTCGCGACCCTGCGCCAAGCACAGCGCGGCCAGCGTAAC 192197
|||||| || ||| ||||| || | || |||| ||||||||||||||| || ||
Sbjct 2471 GTTTCGGCGGAGCTG-TGCATATCCAGGCCTGAAGCCAGGCACAGCGCGGCCAGAGTGAC 2413
Query 192198 CATGACCCCACCTACTTCCTGATACACTTCGCCAACTGGACGGCCGAACACGTAGTCCAC 192257
||| || || || || ||||| | ||||| || || |||||| |||| || || ||
Sbjct 2412 CATCACGCCGCCGACCTCCTGCGATGGCTCGCCGACCGGGCGGCCGTACACATAATCAAC 2353
Query 192258 AAGCTGATGCGCTTCGCTGGCGGTGCAGCCACACGCTTGCACCAGCTCCAGGGCTTCTTC 192317
|||||| |||||||||||||||||||| || ||||||||||| || ||||| ||
Sbjct 2352 AAGCTGGTGCGCTTCGCTGGCGGTGCATTGGTTGGCCTGCACCAGCTCAAGCGCTTCCTC 2293
Query 192318 AAGGAAGCGATGGTTGCGTTCCACAACGTCCGCGGACACTGCGGGGCCGAAGCATTCCAT 192377
|||||| ||||||||||| || ||| |||| | || |||||||| ||||
Sbjct 2292 AAGGAAACGATGGTTGCGCTCTTGGCGGTCGGCGGCAATCGCCTCTCCGAAGCAAGCCAT 2233
Query 192378 CATCCAGGGCTGGACTCGTGCCTGGAACGAGGGCTGGCTG 192417
|||||| ||||| || || | ||||||| | || |||||
Sbjct 2232 CATCCAAGGCTGTACGCGGGGTTGGAACG-GCGCGGGCTG 2194
>seq2815131
Length=243
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 41390 ACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAAGACGTGTGG 41449
||||||||| |||||||||||||| | || | ||| |||||||| ||| |||||||
Sbjct 1 ACGCTGGGTACCGGCAACCACTTCGTCGAGGTCTGCCTGGACCAGGAGCAGCGCGTGTGG 60
Query 41450 ATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCACTACATCGAG 41509
|||||||||| ||||||||| || || ||||| ||||||| ||| |||||||
Sbjct 61 TTCATGCTGCACTCCGGTTCGCGTGGCGTAGGCAATGCCATCGGCACCTACTTCATCGAG 120
Query 41510 CGTGCGCAGAAGGA 41523
| || || ||||
Sbjct 121 CTGGCCAAGCAGGA 134
>seq2955700
Length=463
Score = 86.0 bits (94), Expect = 9e-12
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 40992 TCGCGTTGATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGGTGATCGCTA 41051
||||| |||||||||| | |||| |||| || || | || || ||| | |
Sbjct 409 TCGCGGTGATGCCGGATGTGCACCTGGGCAAGGGTTCGACCATCGGCAGCGTAATCCCCA 350
Query 41052 CGCAAGGTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGCATGGTGGCGG 41111
|| || || || || |||||||||||||||||||||||||||||||| ||| | || |
Sbjct 349 CGGTGGGCGCGATTATCCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGGATGATTGCCG 290
Query 41112 TTCGTACCAGTCTCAAGGCCAGTCAGTTGCCGGACAACCT 41151
|| |||| || | ||||| | ||||| ||||||||
Sbjct 289 CGCGCACCACGCTGACCGCCAGCGATTTGCCCGACAACCT 250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 711323597165400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |