Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq3076860 149 3e-31 seq2830298 125 3e-24 seq2701102 111 7e-20 seq1642876 89.7 2e-13 seq2605055 84.2 1e-11 >seq3076860 Length=1922 Score = 149 bits (164), Expect = 3e-31 Identities = 322/479 (67%), Gaps = 7/479 (1%) Strand=Plus/Minus Query 66273 GGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC 66332 || ||| |||||| |||||||| |||||||||||||| ||||| |||| || | ||| Sbjct 1921 GGCGACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACC 1862 Query 66333 GGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATC 66392 |||| || | | ||||| || | | | || ||| | || ||| ||| Sbjct 1861 GGCAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAAATC 1802 Query 66393 GGCA--ACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCT 66450 || | || | || ||||| || ||||||||||||||||| || ||| |||| Sbjct 1801 GGTGTGATGTTCGGTA--GCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCT 1747 Query 66451 ACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTG 66510 |||| ||||| ||| ||||| |||| | | || | | | ||||||||| || |||| || Sbjct 1746 ACGCTTCGGTCCGTCTGGATATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTG 1687 Query 66511 TCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGG 66570 |||| | | || ||||| || || || ||||||||| |||| || || ||| |||| Sbjct 1686 TCGGTAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCTTTCCGTCAGG 1627 Query 66571 CTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGG 66630 | ||||| || | || ||| | ||||| | || | | || | ||||| ||| Sbjct 1626 CAGAGTTCCAGATTCTTTATGGCAAAGGCATCTACCTGAACGGCGAGATGATCGACTTGG 1567 Query 66631 CCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACA 66690 ||| | || | || ||||||| || ||||||| ||| | || || | Sbjct 1566 GCGTACTGCACGGTTTTGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACGGCAGCAAAA 1507 Query 66691 TCGGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCCGCC 66749 |||| ||||||||| |||| | | | | ||| |||||||||||| |||| ||| Sbjct 1506 TCGGTCAGGGCAAGGCCAACTCGGCCAAATTCCTGGCGGACAACCCGGATATCGCTGCC 1448 >seq2830298 Length=253 Score = 125 bits (138), Expect = 3e-24 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 66065 CGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGA 66124 ||| | | |||||||||| || | || || ||||| ||||||| || || || | Sbjct 1 CGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAACTGGGCGTCAA 60 Query 66125 TGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66184 || ||| | || ||||| |||||| ||||| || ||||| ||||| || ||| || Sbjct 61 CGTTGACGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAAGCCCTCGAAATCACCGA 120 Query 66185 CCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGT 66244 | | || || || || | | | ||||| || ||||| |||||||| ||||| Sbjct 121 CATGCTGGTGCGTTCCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCGCTGGT 180 Query 66245 GCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCT 66304 ||| ||| || ||||||| || || || ||| |||||| |||||||| |||||||| Sbjct 181 ACCGAAGGCAGAAATCGAAGGCGAAATGGGCGACATGCACGTGGGCCTGCAAGCCCGCCT 240 Query 66305 GATGTCTCAGGC 66316 |||||| ||||| Sbjct 241 GATGTCCCAGGC 252 >seq2701102 Length=198 Score = 111 bits (122), Expect = 7e-20 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 66426 ACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCC 66485 ||||||||||| || ||| |||||||| ||||| ||| |||| ||||| | | || | Sbjct 1 ACCGGTGGTAACGCGCTGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGC 60 Query 66486 ACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAAC 66545 | | ||||||||| || |||| ||| || | | || ||||| || || || |||||| Sbjct 61 GCGGTGAAGGAAGGTGACGAGGTTGTTGGTAGCGAAACCCGCGTTAAAGTCGTGAAGAAC 120 Query 66546 AAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601 ||| |||| || || ||| ||||||||||| || |||||||| |||| || Sbjct 121 AAGGTGGCTCCGCCATTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT 176 >seq1642876 Length=127 Score = 89.7 bits (98), Expect = 2e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 66216 ATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGG 66275 ||||| || ||||| ||||| |||||||| ||| || || | ||||| || || || Sbjct 108 ATCGTGGTCGACTCCGTGGCAGCCCTGGTACCGAAAGCTGAAATTGAAGGCGAAATGGGC 49 Query 66276 GACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCG 66322 ||| |||||| |||||||| |||||||||||||| ||||| |||| Sbjct 48 GACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCG 2 >seq2605055 Length=181 Score = 84.2 bits (92), Expect = 1e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 66417 GAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGC 66476 || ||||||||||||||||| || || |||||||| ||||| ||| |||| |||| Sbjct 53 GAAACCACCACCGGTGGTAACGCGTTGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGT 112 Query 66477 AGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTT 66536 | | | | | | ||||||||| || |||| |||||||| | || ||||| || || Sbjct 113 CGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGCAGCGAAACCCGCGTTAAAGTC 172 Query 66537 GTCAAGAAC 66545 || |||||| Sbjct 173 GTGAAGAAC 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 233343516435812