Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_011056.1
Length=75811
Score E
Sequences producing significant alignments: (Bits) Value
seq3076860 149 3e-31
seq2830298 125 3e-24
seq2701102 111 7e-20
seq1642876 89.7 2e-13
seq2605055 84.2 1e-11
>seq3076860
Length=1922
Score = 149 bits (164), Expect = 3e-31
Identities = 322/479 (67%), Gaps = 7/479 (1%)
Strand=Plus/Minus
Query 66273 GGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC 66332
|| ||| |||||| |||||||| |||||||||||||| ||||| |||| || | |||
Sbjct 1921 GGCGACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACC 1862
Query 66333 GGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATC 66392
|||| || | | ||||| || | | | || ||| | || ||| |||
Sbjct 1861 GGCAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAAATC 1802
Query 66393 GGCA--ACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCT 66450
|| | || | || ||||| || ||||||||||||||||| || ||| ||||
Sbjct 1801 GGTGTGATGTTCGGTA--GCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCT 1747
Query 66451 ACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTG 66510
|||| ||||| ||| ||||| |||| | | || | | | ||||||||| || |||| ||
Sbjct 1746 ACGCTTCGGTCCGTCTGGATATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTG 1687
Query 66511 TCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGG 66570
|||| | | || ||||| || || || ||||||||| |||| || || ||| ||||
Sbjct 1686 TCGGTAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCTTTCCGTCAGG 1627
Query 66571 CTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGG 66630
| ||||| || | || ||| | ||||| | || | | || | ||||| |||
Sbjct 1626 CAGAGTTCCAGATTCTTTATGGCAAAGGCATCTACCTGAACGGCGAGATGATCGACTTGG 1567
Query 66631 CCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACA 66690
||| | || | || ||||||| || ||||||| ||| | || || |
Sbjct 1566 GCGTACTGCACGGTTTTGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACGGCAGCAAAA 1507
Query 66691 TCGGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCCGCC 66749
|||| ||||||||| |||| | | | | ||| |||||||||||| |||| |||
Sbjct 1506 TCGGTCAGGGCAAGGCCAACTCGGCCAAATTCCTGGCGGACAACCCGGATATCGCTGCC 1448
>seq2830298
Length=253
Score = 125 bits (138), Expect = 3e-24
Identities = 179/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 66065 CGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGA 66124
||| | | |||||||||| || | || || ||||| ||||||| || || || |
Sbjct 1 CGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAACTGGGCGTCAA 60
Query 66125 TGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66184
|| ||| | || ||||| |||||| ||||| || ||||| ||||| || ||| ||
Sbjct 61 CGTTGACGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAAGCCCTCGAAATCACCGA 120
Query 66185 CCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGT 66244
| | || || || || | | | ||||| || ||||| |||||||| |||||
Sbjct 121 CATGCTGGTGCGTTCCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCGCTGGT 180
Query 66245 GCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCT 66304
||| ||| || ||||||| || || || ||| |||||| |||||||| ||||||||
Sbjct 181 ACCGAAGGCAGAAATCGAAGGCGAAATGGGCGACATGCACGTGGGCCTGCAAGCCCGCCT 240
Query 66305 GATGTCTCAGGC 66316
|||||| |||||
Sbjct 241 GATGTCCCAGGC 252
>seq2701102
Length=198
Score = 111 bits (122), Expect = 7e-20
Identities = 130/176 (74%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 66426 ACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCC 66485
||||||||||| || ||| |||||||| ||||| ||| |||| ||||| | | || |
Sbjct 1 ACCGGTGGTAACGCGCTGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGC 60
Query 66486 ACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAAC 66545
| | ||||||||| || |||| ||| || | | || ||||| || || || ||||||
Sbjct 61 GCGGTGAAGGAAGGTGACGAGGTTGTTGGTAGCGAAACCCGCGTTAAAGTCGTGAAGAAC 120
Query 66546 AAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601
||| |||| || || ||| ||||||||||| || |||||||| |||| ||
Sbjct 121 AAGGTGGCTCCGCCATTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT 176
>seq1642876
Length=127
Score = 89.7 bits (98), Expect = 2e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 66216 ATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGG 66275
||||| || ||||| ||||| |||||||| ||| || || | ||||| || || ||
Sbjct 108 ATCGTGGTCGACTCCGTGGCAGCCCTGGTACCGAAAGCTGAAATTGAAGGCGAAATGGGC 49
Query 66276 GACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCG 66322
||| |||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 48 GACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCG 2
>seq2605055
Length=181
Score = 84.2 bits (92), Expect = 1e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 66417 GAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGC 66476
|| ||||||||||||||||| || || |||||||| ||||| ||| |||| ||||
Sbjct 53 GAAACCACCACCGGTGGTAACGCGTTGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGT 112
Query 66477 AGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTT 66536
| | | | | | ||||||||| || |||| |||||||| | || ||||| || ||
Sbjct 113 CGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGCAGCGAAACCCGCGTTAAAGTC 172
Query 66537 GTCAAGAAC 66545
|| ||||||
Sbjct 173 GTGAAGAAC 181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 233343516435812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |