Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_011165.1 Length=64427 Score E Sequences producing significant alignments: (Bits) Value seq3087670 87.8 7e-13 >seq3087670 Length=5654 Score = 87.8 bits (96), Expect = 7e-13 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 34279 GGGGACGGCTGGAAGTATCGCGGTCGCGGCCTGATCCAGCTGACCGGGAAATCGAACTAT 34338 |||||||| ||||| ||||| ||||||||||||||| | |||||| | | |||||| Sbjct 214 GGGGACGGGCCCAAGTACCGCGGGCGCGGCCTGATCCAGGTCACCGGGCGAGCCAACTAT 273 Query 34339 GCCCTGTTCGCCGAAGACTCCGGTATGGACGTTCTGGAGAAGCCGGAGCTGCTGGAAACT 34398 ||| || || ||||| | || ||||| | | | ||||| ||||||||||| | Sbjct 274 GCCGCGTGCGGCGAAGCCCTGGGCCTGGACCTGATCAACAAGCCTGAGCTGCTGGAGATG 333 Query 34399 CCGGCCGGCGCGTCG--ATGTCTTCGGCATGGTTCT 34432 ||| | || || || ||||| |||| ||||||| Sbjct 334 CCG--CAGCACGCCGCCATGTCAGCGGCTTGGTTCT 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198487886878398