Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq155098 87.8 2e-12 seq20229 82.4 7e-11 >seq155098 Length=7669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| |||| ||| | | ||||||||||||||| ||||||| || |||||| || Sbjct 7225 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTCATC 7284 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || ||||| || || | | |||| || || ||||| ||||| || ||||| || || Sbjct 7285 TTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTATC 7344 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | || || | | || ||||||| || | || Sbjct 7345 CTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 7404 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||| || || |||||||||||||| Sbjct 7405 CTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437 >seq20229 Length=11930 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| || || | ||| |||||||||||||| ||| ||||| || ||||| ||| Sbjct 4844 TACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 4903 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 || || ||||| || | |||||| |||||||||| || Sbjct 4904 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGG 4941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477103501483920