Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq3043706 109 2e-19 seq3088057 91.5 6e-14 seq2971074 91.5 6e-14 seq3088281 89.7 2e-13 >seq3043706 Length=1055 Score = 109 bits (120), Expect = 2e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 52494 CGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACGTACAGCGGC 52553 || || ||||||||| |||||||| ||||| |||||| ||| || |||||||||| Sbjct 816 CGCGGCCGCATCATCAAGGTGCCGAGCAACTACGACCCGCAAACCCGTGTGTACAGCGGC 875 Query 52554 ATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCTGTGGGAC 52613 | ||||| |||| | | ||| | || | | | |||||||||||||| | | ||| Sbjct 876 GTGTGGGATGGCACCTTCAAATCCGCCTGGACCGACAACCCGGCCTGGATCTACTACGAC 935 Query 52614 ATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGTGGACAAG 52673 ||||| |||| |||||| ||| | || | || || | | ||||||||| Sbjct 936 CTGCTGCTGCACCAGCGCTATGGCCTCGGCCACTTGCTCAACGCCGGCCAAGTGGACAAG 995 Query 52674 TGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGG 52723 |||| |||||| ||| | ||||||||||||||| ||| | ||||| Sbjct 996 TGGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGG 1045 >seq3088057 Length=7030 Score = 91.5 bits (100), Expect = 6e-14 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 52547 CAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCT 52606 || ||||||||||||||||| | | ||| ||| |||| ||||||||| || ||| | Sbjct 5605 CAACGGCATCTGGGACGGCACCTTCAAAGAGGCCTACACCAACAACCCTGCGTGGGTGTT 5664 Query 52607 GTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGT 52666 | ||| || || ||||| ||||||| | || | ||| | | || || || Sbjct 5665 TTATGACCTGGTGCTGCACCCTTACTACGGCCTCGGCGATCGCATCGATGCCACGATGGT 5724 Query 52667 GGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGTTT 52726 || ||| |||| ||| ||| ||||| |||||||| |||||||| || ||||| Sbjct 5725 TGATCGCTGGTCGCTTTATCGCATCGCGCAATACTGCGATCAGATGGTGCCGGATGGAAA 5784 Query 52727 CGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTG 52766 || |||| |||||||| | |||| || ||||||| Sbjct 5785 AGGCGGCATGGAGCCGCGCTTTACCTGCAACCTGTACCTG 5824 >seq2971074 Length=519 Score = 91.5 bits (100), Expect = 6e-14 Identities = 191/279 (68%), Gaps = 7/279 (3%) Strand=Plus/Plus Query 116 ACCAGTTTCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGTTGCTA 175 ||||| ||||| || || ||||| ||| || | || || |||||||| | || | Sbjct 245 ACCAGACGCGCCAGGGCGATCGTGGCTCGCACGTCCGACAAGGCGTCGTGGGCCTGGCCA 304 Query 176 TGTTCAATACCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGAC-CGTC-AT 233 || || || || || || ||| ||| ||||||| | || ||| ||| || | || Sbjct 305 TGATCGATTCCGTTGGCGGCGGTCAAACGCTCAAG-CTTGAG---GGT-GACGCGCCCAT 359 Query 234 CATTTTCAGGCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCCA 293 | | || |||||| || ||||||||||| || || ||| | |||| ||||| | Sbjct 360 CCTGCTCTGGCCAGACGATCCCTTCCGGGCGAAGTGCGTAGGCCGTGCGCACCACATCGA 419 Query 294 GTAAATCCCAGCGCGAGTTATCATGCTGCCAGCTCCAGGCGTAAGGATCGTAGAAATTAC 353 ||||||||||| ||| | |||||| | ||||||||| ||| | || || | Sbjct 420 TCAAATCCCAGCGACTGTTGCCGCCCTGCCATTCACGGGCGTAAGGGTCGAAAAAGTTGC 479 Query 354 GATAAAAAACGTTGCGTGTGACTTCGTCGTCGAAACGCA 392 |||| ||| || ||| || | ||| ||||| ||||||| Sbjct 480 GATACAAACTGTAGCGCGTCATTTCATCGTCAAAACGCA 518 >seq3088281 Length=8697 Score = 89.7 bits (98), Expect = 2e-13 Identities = 199/293 (68%), Gaps = 7/293 (2%) Strand=Plus/Plus Query 116 ACCAGTTTCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGTTGCTA 175 |||| | ||||| || || || ||| ||| |||| || |||||||||||| | || | Sbjct 966 ACCAATCGCGCCAGGGCGATGGTCGCGCGCACGTCAGACAACGCATCGTGGGCCTGGCCA 1025 Query 176 TGTTCAATACCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGC-TCGGTAGACCGTCATC 234 || || || || || |||| || | | |||| || ||| || | ||| || Sbjct 1026 TGGTCGATGCCGTTGGCTTGCGTCAGGCGTTCAA-GCTTGAGCGTCACGCGCCCG---TC 1081 Query 235 ATTTTCAGGCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCCAG 294 | |||||||| || || ||||||||||||||||| || |||||| ||||| | Sbjct 1082 CTGCTCAGGCCACACAATCCCGTCCGGGCGCAGGGCATACGCGGTACGCATCACATCGAT 1141 Query 295 TAAATCCCAGCGCGAGTTATCATGCTGCCAGCTC-CAGGCGTAAGGATCGTAGAAATTAC 353 || |||||||| |||| | |||||| ||| | || ||||| ||| | || || | Sbjct 1142 CAAGTCCCAGCGGCTGTTACCGCCCTGCCA-CTCGCGCGCATAAGGGTCGAAAAAGTTGC 1200 Query 354 GATAAAAAACGTTGCGTGTGACTTCGTCGTCGAAACGCACATTGTTGTAGCCC 406 | || | || ||| || | ||| ||||| || |||| |||| || ||| Sbjct 1201 GGTACAGGCTGTAGCGCGTCATTTCATCGTCAAAGCGCAGGGTGTTATAACCC 1253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191459475471438