Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_011357.1
Length=62147
Score E
Sequences producing significant alignments: (Bits) Value
seq3043706 109 2e-19
seq3088057 91.5 6e-14
seq2971074 91.5 6e-14
seq3088281 89.7 2e-13
>seq3043706
Length=1055
Score = 109 bits (120), Expect = 2e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 52494 CGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACGTACAGCGGC 52553
|| || ||||||||| |||||||| ||||| |||||| ||| || ||||||||||
Sbjct 816 CGCGGCCGCATCATCAAGGTGCCGAGCAACTACGACCCGCAAACCCGTGTGTACAGCGGC 875
Query 52554 ATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCTGTGGGAC 52613
| ||||| |||| | | ||| | || | | | |||||||||||||| | | |||
Sbjct 876 GTGTGGGATGGCACCTTCAAATCCGCCTGGACCGACAACCCGGCCTGGATCTACTACGAC 935
Query 52614 ATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGTGGACAAG 52673
||||| |||| |||||| ||| | || | || || | | |||||||||
Sbjct 936 CTGCTGCTGCACCAGCGCTATGGCCTCGGCCACTTGCTCAACGCCGGCCAAGTGGACAAG 995
Query 52674 TGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGG 52723
|||| |||||| ||| | ||||||||||||||| ||| | |||||
Sbjct 996 TGGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGG 1045
>seq3088057
Length=7030
Score = 91.5 bits (100), Expect = 6e-14
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 52547 CAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCT 52606
|| ||||||||||||||||| | | ||| ||| |||| ||||||||| || ||| |
Sbjct 5605 CAACGGCATCTGGGACGGCACCTTCAAAGAGGCCTACACCAACAACCCTGCGTGGGTGTT 5664
Query 52607 GTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGT 52666
| ||| || || ||||| ||||||| | || | ||| | | || || ||
Sbjct 5665 TTATGACCTGGTGCTGCACCCTTACTACGGCCTCGGCGATCGCATCGATGCCACGATGGT 5724
Query 52667 GGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGTTT 52726
|| ||| |||| ||| ||| ||||| |||||||| |||||||| || |||||
Sbjct 5725 TGATCGCTGGTCGCTTTATCGCATCGCGCAATACTGCGATCAGATGGTGCCGGATGGAAA 5784
Query 52727 CGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTG 52766
|| |||| |||||||| | |||| || |||||||
Sbjct 5785 AGGCGGCATGGAGCCGCGCTTTACCTGCAACCTGTACCTG 5824
>seq2971074
Length=519
Score = 91.5 bits (100), Expect = 6e-14
Identities = 191/279 (68%), Gaps = 7/279 (3%)
Strand=Plus/Plus
Query 116 ACCAGTTTCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGTTGCTA 175
||||| ||||| || || ||||| ||| || | || || |||||||| | || |
Sbjct 245 ACCAGACGCGCCAGGGCGATCGTGGCTCGCACGTCCGACAAGGCGTCGTGGGCCTGGCCA 304
Query 176 TGTTCAATACCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGAC-CGTC-AT 233
|| || || || || || ||| ||| ||||||| | || ||| ||| || | ||
Sbjct 305 TGATCGATTCCGTTGGCGGCGGTCAAACGCTCAAG-CTTGAG---GGT-GACGCGCCCAT 359
Query 234 CATTTTCAGGCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCCA 293
| | || |||||| || ||||||||||| || || ||| | |||| ||||| |
Sbjct 360 CCTGCTCTGGCCAGACGATCCCTTCCGGGCGAAGTGCGTAGGCCGTGCGCACCACATCGA 419
Query 294 GTAAATCCCAGCGCGAGTTATCATGCTGCCAGCTCCAGGCGTAAGGATCGTAGAAATTAC 353
||||||||||| ||| | |||||| | ||||||||| ||| | || || |
Sbjct 420 TCAAATCCCAGCGACTGTTGCCGCCCTGCCATTCACGGGCGTAAGGGTCGAAAAAGTTGC 479
Query 354 GATAAAAAACGTTGCGTGTGACTTCGTCGTCGAAACGCA 392
|||| ||| || ||| || | ||| ||||| |||||||
Sbjct 480 GATACAAACTGTAGCGCGTCATTTCATCGTCAAAACGCA 518
>seq3088281
Length=8697
Score = 89.7 bits (98), Expect = 2e-13
Identities = 199/293 (68%), Gaps = 7/293 (2%)
Strand=Plus/Plus
Query 116 ACCAGTTTCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGTTGCTA 175
|||| | ||||| || || || ||| ||| |||| || |||||||||||| | || |
Sbjct 966 ACCAATCGCGCCAGGGCGATGGTCGCGCGCACGTCAGACAACGCATCGTGGGCCTGGCCA 1025
Query 176 TGTTCAATACCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGC-TCGGTAGACCGTCATC 234
|| || || || || |||| || | | |||| || ||| || | ||| ||
Sbjct 1026 TGGTCGATGCCGTTGGCTTGCGTCAGGCGTTCAA-GCTTGAGCGTCACGCGCCCG---TC 1081
Query 235 ATTTTCAGGCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCCAG 294
| |||||||| || || ||||||||||||||||| || |||||| ||||| |
Sbjct 1082 CTGCTCAGGCCACACAATCCCGTCCGGGCGCAGGGCATACGCGGTACGCATCACATCGAT 1141
Query 295 TAAATCCCAGCGCGAGTTATCATGCTGCCAGCTC-CAGGCGTAAGGATCGTAGAAATTAC 353
|| |||||||| |||| | |||||| ||| | || ||||| ||| | || || |
Sbjct 1142 CAAGTCCCAGCGGCTGTTACCGCCCTGCCA-CTCGCGCGCATAAGGGTCGAAAAAGTTGC 1200
Query 354 GATAAAAAACGTTGCGTGTGACTTCGTCGTCGAAACGCACATTGTTGTAGCCC 406
| || | || ||| || | ||| ||||| || |||| |||| || |||
Sbjct 1201 GGTACAGGCTGTAGCGCGTCATTTCATCGTCAAAGCGCAGGGTGTTATAACCC 1253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 191459475471438
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |