Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_011373.1 Length=46872 Score E Sequences producing significant alignments: (Bits) Value seq3083946 136 1e-27 seq3035315 113 1e-20 seq2977175 109 2e-19 seq3088489 96.9 1e-15 seq284340 96.9 1e-15 seq3082973 87.8 5e-13 seq2724356 86.0 2e-12 seq339202 82.4 2e-11 seq301098 80.6 8e-11 >seq3083946 Length=2825 Score = 136 bits (150), Expect = 1e-27 Identities = 178/245 (73%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 41120 CGTCGTGAACCAGTTGTTCTCCGAACTTCAATCGATCTTCCCGGCCTGGCGGCAGGCGTG 41179 |||||||||| | ||||| ||| | || |||| |||||||||||| ||||| || Sbjct 2622 CGTCGTGAACGCGCTGTTCAAAGAATTGCAGGCGATTTTCCCGGCCTGGAAACAGGCTTG 2563 Query 41180 GCCAACCGCTGAGGCGATTGCCAAGGCCAAACGTACTTGGATCAAGGCGTTCATGGATGC 41239 ||| || || || | | ||||| || | |||||||||||||||||| | ||| Sbjct 2562 GCCTGATGCCGAATCGCTGAACGCCGCCAAGCGCAGTTGGATCAAGGCGTTCATCGTTGC 2503 Query 41240 AGGTCTGAACAGTCTGGAACAGATCCGCTATGGCATTCAGCAATGCCGGGCCTCTGGCGG 41299 || | | || || || ||||||||||| ||| | ||| | |||||| ||||| Sbjct 2502 GGGGATCACCACCCTTGAGCAGATCCGCTACGGCCTGCAGAACTGCCGGCAGATCGGCGG 2443 Query 41300 CGACTTCGCGCCCAGCGTCGGCAATTTCATCAAGTGGTGCAACCCGAGTCCTGAGCATCT 41359 ||||||||||| ||||||||||| |||||||| |||||| | || | || ||| || Sbjct 2442 AGACTTCGCGCCAAGCGTCGGCAAGTTCATCAAATGGTGCCAGCCCACACCAGAG-ATGC 2384 Query 41360 TGGGC 41364 ||||| Sbjct 2383 TGGGC 2379 >seq3035315 Length=952 Score = 113 bits (124), Expect = 1e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 43281 GGCGCGGAAGGCTATCGCAGACCGGGAGCGGAGGGAGATCAGGGTTCGGAAGGAGCGGCT 43340 ||| || ||||| | || ||| ||||| | ||| |||| ||| || |||||| | | Sbjct 483 GGCACGAAAGGCGCTGGCCGACGTTGAGCGCAAGGACATCAAGGTCCGCAAGGAGAAGAT 542 Query 43341 GAAGAGCAGGGCGGATCACCTGCGCGAGGCTCAAGCTGCGTTCAACGAGTTCATTCGCCT 43400 |||||| |||||||| ||||||||||| || || || ||| | ||||||| | | ||||| Sbjct 543 GAAGAGTAGGGCGGACCACCTGCGCGAAGCCCAGGCCGCGGTGAACGAGTACGTGCGCCT 602 Query 43401 GCGCGACGCCGACCAGCCGTGCATCAGTTG 43430 ||| ||||| ||| ||| |||||||| || Sbjct 603 GCGTGACGCGCACCTGCCATGCATCAGCTG 632 >seq2977175 Length=546 Score = 109 bits (120), Expect = 2e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 43306 GAGCGGAGGGAGATCAGGGTTCGGAAGGAGCGGCTGAAGAGCAGGGCGGATCACCTGCGC 43365 ||||| | ||| |||| ||| || ||||| |||||||||||||||||| ||||||||| Sbjct 102 GAGCGCAAGGACATCAAGGTCCGCAAGGAAAAGCTGAAGAGCAGGGCGGACCACCTGCGC 161 Query 43366 GAGGCTCAAGCTGCGTTCAACGAGTTCATTCGCCTGCGCGACGCCGACCAGCCGTGCATC 43425 || || || |||||| | ||||||| | | || |||| ||||| ||| ||| |||||| Sbjct 162 GAAGCCCAGGCTGCGGTGAACGAGTACGTGCGAATGCGTGACGCGCACCTGCCATGCATC 221 Query 43426 AGTTG 43430 || || Sbjct 222 AGCTG 226 >seq3088489 Length=17307 Score = 96.9 bits (106), Expect = 1e-15 Identities = 139/189 (74%), Gaps = 23/189 (12%) Strand=Plus/Plus Query 23882 GAGGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGGTA-AGGCTCCCGGCACACCCGA 23940 ||||| ||| | |||| |||||||| || ||||||| || ||| ||||||| |||||| Sbjct 13141 GAGGGTGGC-AGCTGTGCGCGGGTTAGCGGACCGGGCATACAGGACCCCGGCAGACCCGA 13199 Query 23941 AGGTGTCCCACGCACAGCCCGCCATAAA-GCGAG-----GGCACaaaaaaa-CGC----- 23988 |||| |||||||||||| || ||||||| | ||| |||||||||||| ||| Sbjct 13200 AGGTCTCCCACGCACAG-CCACCATAAACGAGAGTCGCAGGCACAAAAAAAGCGCATGCA 13258 Query 23989 ------CCTGCGGCGC-TGTGCGCCT-TACCGATTCGGGCGGCCAAGCCCGACCGCTGAA 24040 | | |||| ||||||||| || |||||| || || |||| ||||||| Sbjct 13259 ATCGAGTCGGAAGCGCTTGTGCGCCTGTATGTGCTCGGGCCGCTAAACCCGGTCGCTGAA 13318 Query 24041 TTTGCAGCG 24049 ||||||||| Sbjct 13319 TTTGCAGCG 13327 >seq284340 Length=15504 Score = 96.9 bits (106), Expect = 1e-15 Identities = 284/441 (64%), Gaps = 9/441 (2%) Strand=Plus/Plus Query 43288 AAGGCTATCGCAGACCGGGAGCGGAGGGAGATCAGGGTTCGGAAGGAGCGGCTGAAGAGC 43347 ||||| | |||||| ||||| | ||||||| ||| || || ||| |||||||||| Sbjct 14157 AAGGCGCTGGCAGACATCGAGCGCAAAGAGATCAAGGTCCGCAAAGAGAAGCTGAAGAGC 14216 Query 43348 AGGGCGGATCACCTGCGCGAGGCTCAAGCTGCGTTCAACGAGTTCATTCGCCTGCGCGAC 43407 |||||||||||||| || | || || ||||||| | | ||| || || Sbjct 14217 AGGGCGGATCACCTCAAAGACACGCAGCAGGCCTTCAACGCCTGGGTGCGCGCCCGTGAT 14276 Query 43408 GCCGACCAGCCGTGCATCAGTTGTGGACGCCACCACGACGGGCAGTNNNNNNNNNNNNNN 43467 || |||| ||| ||| |||| ||||| || |||||| | || ||| Sbjct 14277 GCGGACCTGCCATGCGTCAGCTGTGGTCGGCACCACCAGGGCAAGTATGACGCTGGCCAT 14336 Query 43468 NNNNNNACGGTTGCCGCCAGCCCAGAGCTTCGCTTCGAGCCGCTCAACGTGAACAAACAA 43527 || || | || || | | ||||||||||| | ||| || || Sbjct 14337 TACCGGACAGTGGGGAGCAATCCTGCATTGCGCTTCGAGCCAATGAACTGCCACCGCCAG 14396 Query 43528 TGCGCCCCATGCAACAACCACAAGTCAGGGGACATCGTGAACTACCGGATCAACCTGGTG 43587 || | || ||||||| || || ||| |||||||||| || || || | |||||| Sbjct 14397 TGTTCACCGTGCAACACCCGGCTTTCCGGGAACATCGTGAATTATCGCATTGAGCTGGTG 14456 Query 43588 CGCAAG---ATCGGCGCAGAGAACGTGGAGTGGCTGGAAGGCCCTCATGAGCCCCTGAAA 43644 ||| ||||| || ||| || |||||||| ||||||||||||||| || ||| Sbjct 14457 ---AAGCGTATCGGTGCCGAGGCTGTCGAGTGGCTCGAAGGCCCTCATGAGGCCAAGAAG 14513 Query 43645 CTGACCATCGACGAAATCAAAGCGCTGAAGGCCAAGTTCCGGGCCTGGGTGCGAGAACTG 43704 ||| | || || | || ||| ||| ||| | | |||||| | ||||||| Sbjct 14514 TACACCGTGGATGAGCTGAAGGCGATGACCGCCGACTACCGGGCAAAGACCAAAGAACTG 14573 Query 43705 AAG-AGGGCAACG--GCATGA 43722 ||| |||| | || |||||| Sbjct 14574 AAGAAGGGGATCGCAGCATGA 14594 >seq3082973 Length=2614 Score = 87.8 bits (96), Expect = 5e-13 Identities = 137/191 (72%), Gaps = 25/191 (13%) Strand=Plus/Minus Query 23884 GGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGG-GTAAGGCTCCCGGCACACCCGAAG 23942 ||| |||| |||||||| |||| || ||||||| || |||| |||||| | | ||| Sbjct 2414 GGGTGGCGG-CTGTACGCAGGTTTGCAGACCGGGACGTTAGGCACCCGGCGCGCTCGAGA 2356 Query 23943 GTGTCCCACGCACAGCCCGCCATAAAGCGAGG------GCACaaaaaaaCGCCCTGC--- 23993 | | ||||||||||||| ||||||||||| | ||| ||||||| ||||| Sbjct 2355 GCGCCCCACGCACAGCCA-CCATAAAGCGAAGTTGCAGGCATAAAAAAAGCGCCTGCTTT 2297 Query 23994 ---------GGCGCTG-TGCGCCTTACCGAT--TCGGGCGGCCAAGCCCGACCGCTGAAT 24041 |||||| ||||||| || ||| |||||| || || |||| |||||||| Sbjct 2296 CGGAACGGTGGCGCTTATGCGCCTAAC-GATGTTCGGGCTGCAAAACCCGGTCGCTGAAT 2238 Query 24042 TTGCAGCGGCA 24052 |||||||| || Sbjct 2237 TTGCAGCGACA 2227 >seq2724356 Length=204 Score = 86.0 bits (94), Expect = 2e-12 Identities = 77/93 (83%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 23879 GAAGAGGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGGT-AAGGCTCCCGGCACACC 23937 ||| |||| ||||| ||||||||||||| || |||| || | |||| ||| || |||| Sbjct 204 GAAAAGGGTGGCGA-CTGTACGCGGGTTAGCAGACCAGGAATCAAGGAACCCAGCGCACC 146 Query 23938 CGAAGGTGTCCCACGCACAGCCCGCCATAAAGC 23970 |||||||| ||||||||||| ||||||||| || Sbjct 145 CGAAGGTGCCCCACGCACAG-CCGCCATAACGC 114 >seq339202 Length=21042 Score = 82.4 bits (90), Expect = 2e-11 Identities = 86/108 (80%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 23864 CATCTCTGCGACCAAGAAGAGGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGGT-AA 23922 |||| |||| | | ||| |||| ||||| ||||||||||||| || |||| || | || Sbjct 18508 CATCGCTGCTAA-ACGAAAAGGGTGGCGA-CTGTACGCGGGTTAGCAGACCAGGAATCAA 18451 Query 23923 GGCTCCCGGCACACCCGAAGGTGTCCCACGCACAGCCCGCCATAAAGC 23970 || ||| || |||||||| ||| ||||||||||| ||||||||| || Sbjct 18450 GGAACCCAGCGCACCCGAAAGTGCCCCACGCACAG-CCGCCATAACGC 18404 >seq301098 Length=806 Score = 80.6 bits (88), Expect = 8e-11 Identities = 72/86 (84%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 23884 GGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGG--TAAGGCTCCCGGCACACCCGAA 23941 ||| ||| | ||||||||||||| || ||||| || |||||| |||||| ||||||| Sbjct 312 GGGTGGC-AGCTGTACGCGGGTTCGCAGACCGAGGAGTTAAGGC--CCGGCAGACCCGAA 256 Query 23942 GGTGTCCCACGCACAGCCCGCCATAA 23967 ||| |||||||||||| ||||||||| Sbjct 255 GGTCTCCCACGCACAG-CCGCCATAA 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144372201681388