Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_011373.1
Length=46872
Score E
Sequences producing significant alignments: (Bits) Value
seq3083946 136 1e-27
seq3035315 113 1e-20
seq2977175 109 2e-19
seq3088489 96.9 1e-15
seq284340 96.9 1e-15
seq3082973 87.8 5e-13
seq2724356 86.0 2e-12
seq339202 82.4 2e-11
seq301098 80.6 8e-11
>seq3083946
Length=2825
Score = 136 bits (150), Expect = 1e-27
Identities = 178/245 (73%), Gaps = 1/245 (0%)
Strand=Plus/Minus
Query 41120 CGTCGTGAACCAGTTGTTCTCCGAACTTCAATCGATCTTCCCGGCCTGGCGGCAGGCGTG 41179
|||||||||| | ||||| ||| | || |||| |||||||||||| ||||| ||
Sbjct 2622 CGTCGTGAACGCGCTGTTCAAAGAATTGCAGGCGATTTTCCCGGCCTGGAAACAGGCTTG 2563
Query 41180 GCCAACCGCTGAGGCGATTGCCAAGGCCAAACGTACTTGGATCAAGGCGTTCATGGATGC 41239
||| || || || | | ||||| || | |||||||||||||||||| | |||
Sbjct 2562 GCCTGATGCCGAATCGCTGAACGCCGCCAAGCGCAGTTGGATCAAGGCGTTCATCGTTGC 2503
Query 41240 AGGTCTGAACAGTCTGGAACAGATCCGCTATGGCATTCAGCAATGCCGGGCCTCTGGCGG 41299
|| | | || || || ||||||||||| ||| | ||| | |||||| |||||
Sbjct 2502 GGGGATCACCACCCTTGAGCAGATCCGCTACGGCCTGCAGAACTGCCGGCAGATCGGCGG 2443
Query 41300 CGACTTCGCGCCCAGCGTCGGCAATTTCATCAAGTGGTGCAACCCGAGTCCTGAGCATCT 41359
||||||||||| ||||||||||| |||||||| |||||| | || | || ||| ||
Sbjct 2442 AGACTTCGCGCCAAGCGTCGGCAAGTTCATCAAATGGTGCCAGCCCACACCAGAG-ATGC 2384
Query 41360 TGGGC 41364
|||||
Sbjct 2383 TGGGC 2379
>seq3035315
Length=952
Score = 113 bits (124), Expect = 1e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 43281 GGCGCGGAAGGCTATCGCAGACCGGGAGCGGAGGGAGATCAGGGTTCGGAAGGAGCGGCT 43340
||| || ||||| | || ||| ||||| | ||| |||| ||| || |||||| | |
Sbjct 483 GGCACGAAAGGCGCTGGCCGACGTTGAGCGCAAGGACATCAAGGTCCGCAAGGAGAAGAT 542
Query 43341 GAAGAGCAGGGCGGATCACCTGCGCGAGGCTCAAGCTGCGTTCAACGAGTTCATTCGCCT 43400
|||||| |||||||| ||||||||||| || || || ||| | ||||||| | | |||||
Sbjct 543 GAAGAGTAGGGCGGACCACCTGCGCGAAGCCCAGGCCGCGGTGAACGAGTACGTGCGCCT 602
Query 43401 GCGCGACGCCGACCAGCCGTGCATCAGTTG 43430
||| ||||| ||| ||| |||||||| ||
Sbjct 603 GCGTGACGCGCACCTGCCATGCATCAGCTG 632
>seq2977175
Length=546
Score = 109 bits (120), Expect = 2e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 43306 GAGCGGAGGGAGATCAGGGTTCGGAAGGAGCGGCTGAAGAGCAGGGCGGATCACCTGCGC 43365
||||| | ||| |||| ||| || ||||| |||||||||||||||||| |||||||||
Sbjct 102 GAGCGCAAGGACATCAAGGTCCGCAAGGAAAAGCTGAAGAGCAGGGCGGACCACCTGCGC 161
Query 43366 GAGGCTCAAGCTGCGTTCAACGAGTTCATTCGCCTGCGCGACGCCGACCAGCCGTGCATC 43425
|| || || |||||| | ||||||| | | || |||| ||||| ||| ||| ||||||
Sbjct 162 GAAGCCCAGGCTGCGGTGAACGAGTACGTGCGAATGCGTGACGCGCACCTGCCATGCATC 221
Query 43426 AGTTG 43430
|| ||
Sbjct 222 AGCTG 226
>seq3088489
Length=17307
Score = 96.9 bits (106), Expect = 1e-15
Identities = 139/189 (74%), Gaps = 23/189 (12%)
Strand=Plus/Plus
Query 23882 GAGGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGGTA-AGGCTCCCGGCACACCCGA 23940
||||| ||| | |||| |||||||| || ||||||| || ||| ||||||| ||||||
Sbjct 13141 GAGGGTGGC-AGCTGTGCGCGGGTTAGCGGACCGGGCATACAGGACCCCGGCAGACCCGA 13199
Query 23941 AGGTGTCCCACGCACAGCCCGCCATAAA-GCGAG-----GGCACaaaaaaa-CGC----- 23988
|||| |||||||||||| || ||||||| | ||| |||||||||||| |||
Sbjct 13200 AGGTCTCCCACGCACAG-CCACCATAAACGAGAGTCGCAGGCACAAAAAAAGCGCATGCA 13258
Query 23989 ------CCTGCGGCGC-TGTGCGCCT-TACCGATTCGGGCGGCCAAGCCCGACCGCTGAA 24040
| | |||| ||||||||| || |||||| || || |||| |||||||
Sbjct 13259 ATCGAGTCGGAAGCGCTTGTGCGCCTGTATGTGCTCGGGCCGCTAAACCCGGTCGCTGAA 13318
Query 24041 TTTGCAGCG 24049
|||||||||
Sbjct 13319 TTTGCAGCG 13327
>seq284340
Length=15504
Score = 96.9 bits (106), Expect = 1e-15
Identities = 284/441 (64%), Gaps = 9/441 (2%)
Strand=Plus/Plus
Query 43288 AAGGCTATCGCAGACCGGGAGCGGAGGGAGATCAGGGTTCGGAAGGAGCGGCTGAAGAGC 43347
||||| | |||||| ||||| | ||||||| ||| || || ||| ||||||||||
Sbjct 14157 AAGGCGCTGGCAGACATCGAGCGCAAAGAGATCAAGGTCCGCAAAGAGAAGCTGAAGAGC 14216
Query 43348 AGGGCGGATCACCTGCGCGAGGCTCAAGCTGCGTTCAACGAGTTCATTCGCCTGCGCGAC 43407
|||||||||||||| || | || || ||||||| | | ||| || ||
Sbjct 14217 AGGGCGGATCACCTCAAAGACACGCAGCAGGCCTTCAACGCCTGGGTGCGCGCCCGTGAT 14276
Query 43408 GCCGACCAGCCGTGCATCAGTTGTGGACGCCACCACGACGGGCAGTNNNNNNNNNNNNNN 43467
|| |||| ||| ||| |||| ||||| || |||||| | || |||
Sbjct 14277 GCGGACCTGCCATGCGTCAGCTGTGGTCGGCACCACCAGGGCAAGTATGACGCTGGCCAT 14336
Query 43468 NNNNNNACGGTTGCCGCCAGCCCAGAGCTTCGCTTCGAGCCGCTCAACGTGAACAAACAA 43527
|| || | || || | | ||||||||||| | ||| || ||
Sbjct 14337 TACCGGACAGTGGGGAGCAATCCTGCATTGCGCTTCGAGCCAATGAACTGCCACCGCCAG 14396
Query 43528 TGCGCCCCATGCAACAACCACAAGTCAGGGGACATCGTGAACTACCGGATCAACCTGGTG 43587
|| | || ||||||| || || ||| |||||||||| || || || | ||||||
Sbjct 14397 TGTTCACCGTGCAACACCCGGCTTTCCGGGAACATCGTGAATTATCGCATTGAGCTGGTG 14456
Query 43588 CGCAAG---ATCGGCGCAGAGAACGTGGAGTGGCTGGAAGGCCCTCATGAGCCCCTGAAA 43644
||| ||||| || ||| || |||||||| ||||||||||||||| || |||
Sbjct 14457 ---AAGCGTATCGGTGCCGAGGCTGTCGAGTGGCTCGAAGGCCCTCATGAGGCCAAGAAG 14513
Query 43645 CTGACCATCGACGAAATCAAAGCGCTGAAGGCCAAGTTCCGGGCCTGGGTGCGAGAACTG 43704
||| | || || | || ||| ||| ||| | | |||||| | |||||||
Sbjct 14514 TACACCGTGGATGAGCTGAAGGCGATGACCGCCGACTACCGGGCAAAGACCAAAGAACTG 14573
Query 43705 AAG-AGGGCAACG--GCATGA 43722
||| |||| | || ||||||
Sbjct 14574 AAGAAGGGGATCGCAGCATGA 14594
>seq3082973
Length=2614
Score = 87.8 bits (96), Expect = 5e-13
Identities = 137/191 (72%), Gaps = 25/191 (13%)
Strand=Plus/Minus
Query 23884 GGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGG-GTAAGGCTCCCGGCACACCCGAAG 23942
||| |||| |||||||| |||| || ||||||| || |||| |||||| | | |||
Sbjct 2414 GGGTGGCGG-CTGTACGCAGGTTTGCAGACCGGGACGTTAGGCACCCGGCGCGCTCGAGA 2356
Query 23943 GTGTCCCACGCACAGCCCGCCATAAAGCGAGG------GCACaaaaaaaCGCCCTGC--- 23993
| | ||||||||||||| ||||||||||| | ||| ||||||| |||||
Sbjct 2355 GCGCCCCACGCACAGCCA-CCATAAAGCGAAGTTGCAGGCATAAAAAAAGCGCCTGCTTT 2297
Query 23994 ---------GGCGCTG-TGCGCCTTACCGAT--TCGGGCGGCCAAGCCCGACCGCTGAAT 24041
|||||| ||||||| || ||| |||||| || || |||| ||||||||
Sbjct 2296 CGGAACGGTGGCGCTTATGCGCCTAAC-GATGTTCGGGCTGCAAAACCCGGTCGCTGAAT 2238
Query 24042 TTGCAGCGGCA 24052
|||||||| ||
Sbjct 2237 TTGCAGCGACA 2227
>seq2724356
Length=204
Score = 86.0 bits (94), Expect = 2e-12
Identities = 77/93 (83%), Gaps = 3/93 (3%)
Strand=Plus/Minus
Query 23879 GAAGAGGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGGT-AAGGCTCCCGGCACACC 23937
||| |||| ||||| ||||||||||||| || |||| || | |||| ||| || ||||
Sbjct 204 GAAAAGGGTGGCGA-CTGTACGCGGGTTAGCAGACCAGGAATCAAGGAACCCAGCGCACC 146
Query 23938 CGAAGGTGTCCCACGCACAGCCCGCCATAAAGC 23970
|||||||| ||||||||||| ||||||||| ||
Sbjct 145 CGAAGGTGCCCCACGCACAG-CCGCCATAACGC 114
>seq339202
Length=21042
Score = 82.4 bits (90), Expect = 2e-11
Identities = 86/108 (80%), Gaps = 4/108 (4%)
Strand=Plus/Minus
Query 23864 CATCTCTGCGACCAAGAAGAGGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGGT-AA 23922
|||| |||| | | ||| |||| ||||| ||||||||||||| || |||| || | ||
Sbjct 18508 CATCGCTGCTAA-ACGAAAAGGGTGGCGA-CTGTACGCGGGTTAGCAGACCAGGAATCAA 18451
Query 23923 GGCTCCCGGCACACCCGAAGGTGTCCCACGCACAGCCCGCCATAAAGC 23970
|| ||| || |||||||| ||| ||||||||||| ||||||||| ||
Sbjct 18450 GGAACCCAGCGCACCCGAAAGTGCCCCACGCACAG-CCGCCATAACGC 18404
>seq301098
Length=806
Score = 80.6 bits (88), Expect = 8e-11
Identities = 72/86 (84%), Gaps = 6/86 (7%)
Strand=Plus/Minus
Query 23884 GGGAGGCGAACTGTACGCGGGTTGGCCGACCGGGGG--TAAGGCTCCCGGCACACCCGAA 23941
||| ||| | ||||||||||||| || ||||| || |||||| |||||| |||||||
Sbjct 312 GGGTGGC-AGCTGTACGCGGGTTCGCAGACCGAGGAGTTAAGGC--CCGGCAGACCCGAA 256
Query 23942 GGTGTCCCACGCACAGCCCGCCATAA 23967
||| |||||||||||| |||||||||
Sbjct 255 GGTCTCCCACGCACAG-CCGCCATAA 231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144372201681388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |