Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq155098 95.1 8e-15 seq185925 86.0 4e-12 >seq155098 Length=7669 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || |||| |||||| || || || ||||| ||| |||| || Sbjct 7211 CCACCAAGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGAC 7270 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| || ||||| ||| Sbjct 7271 AAAGTACGTTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGA 7330 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| | |||||| ||||||| ||||| ||| || Sbjct 7331 ATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACC 7390 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || ||||| || || |||||||| ||||| || Sbjct 7391 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 7440 >seq185925 Length=7279 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || |||| |||||| || || || ||||| |||||||| || Sbjct 290 CCACCATGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 349 Query 15010 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | || | ||||| | ||| |||||||| | ||| | || ||||| || Sbjct 350 AAAGTATGTC-CATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGG 408 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 409 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGAC 468 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || ||||| || || | ||||| ||||| || Sbjct 469 CTCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCATCTT 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 343939326309635