Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq3065921 179 9e-41 seq3057371 178 3e-40 seq3088442 145 2e-30 seq2997156 141 2e-29 seq2743190 120 8e-23 seq2379709 104 6e-18 seq2419957 84.2 5e-12 >seq3065921 Length=1479 Score = 179 bits (198), Expect = 9e-41 Identities = 399/592 (67%), Gaps = 15/592 (3%) Strand=Plus/Plus Query 24856 CCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTGCTT-ATGCGGCCGT 24914 |||||| |||||||| || | ||| |||||||| |||||| | | ||| ||||| || Sbjct 1 CCACGAATGCTACGTTGAAGTATTTGCCGGCGGCGCCGCG-CTCTACTTCATGCGTCCCC 59 Query 24915 ACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTGTCCCTGTACCGCT 24974 | | || | | || || || |||||||| |||||||| |||||| | ||||| ||| Sbjct 60 AGGCTGCGCCTGTTGAAGTCCTTAACGACATTAACGGCGACCTGGTGACGCTGTATCGCG 119 Query 24975 GCGTGCGCCACCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCCCTGGTCTCGCGAC 25034 ||||| |||||||||| || ||||||||| |||| ||| | || ||||| | Sbjct 120 TCGTGCAGAACCACCTGGAAGAATTCGTGCGCCAGTTCAAATGGGCGCTCAGTTCGCGCC 179 Query 25035 AGATGTTCGAGTGGGCACAGATGGAGCGCCCGGAGACGCTGACCGACATCCAGCGCGCAG 25094 | ||||||||||| ||||| ||||| || || || |||||||| |||||||| | Sbjct 180 AAGTGTTCGAGTGGCAGAAGATGACCCGCCCTGAAACACTCACCGACATACAGCGCGCCG 239 Query 25095 CGCGGTTCTACTACCTGCAAAAGCTGGCATTCGGCGGCAAGGTGCAGGGGCAATCGTTCG 25154 |||| || | ||||||||| | | || || | |||||||| |||||| |||||| Sbjct 240 CGCGATTTTTCTACCTGCAGCACCATGCCTTTGCTGGCAAGGTAACGGGGCAGACGTTCG 299 Query 25155 GTGTGGTGACGGCTGGTGGGCCGCGATTGAACCTTCTGCGCATTGAAGAGGAACTGAGCG 25214 | | ||| | | | | |||| | ||||| ||||| || || || || | | | Sbjct 300 GCACTGCGACCACCG--GCCCAGCGA-TCAACCTGCTGCGGATCGAGGA-AAATTTATC- 354 Query 25215 CGGTGCATCTT-----CGCCTGGCAAACACCGTAATCGAGTGCCTGCCATGGCAGGAGTG 25269 |||| ||| || || | |||| | || |||| |||| ||||| Sbjct 355 ---TGCAGCTTGGCAGCGTCTTTCCGGCACCTACGTTGAAAACCTGGGCTGGCTTGAGTG 411 Query 25270 CGTGCGGCGCTACGATCGCCCGGGAACACTGTTCTACCTTGATCCGCCCTACTGGGAAAC 25329 | ||| ||||| ||||| || | |||| | || ||||| |||||| | || Sbjct 412 TGCAGAGCGTTACGACCGCCCCCATACCTTCCACTACATGGACCCGCCTTACTGGCAGAC 471 Query 25330 CGAGGGCTATGGCGTTGAGTTCCCGTTTGCTGAGTACGAGGCGATGGCCGAGCTGATGCG 25389 || || || ||||| || || || || | | |||||| |||||||| | ||||| Sbjct 472 CGCCGGTTACGGCGTGGATTTTCCCTTCGAGAATTACGAGCGCATGGCCGACTTCATGCG 531 Query 25390 CACCTCGGCTGGCCGGTTCGTGGTCTCGATCAACGACCATCCTGAGATCCGC 25441 || | ||| | || ||||| ||||||||||| || || || ||| Sbjct 532 GCGCTGTGAAGGCAAGGTCATGGTCAGCATCAACGACCACCCGGACATACGC 583 >seq3057371 Length=1278 Score = 178 bits (196), Expect = 3e-40 Identities = 221/300 (74%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 24857 CACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTGCTT-ATGCGGCCGTA 24915 ||||| |||||||| || | ||| |||||||| |||||| | | ||| ||||| || | Sbjct 1 CACGAATGCTACGTTGAAGTATTTGCCGGCGGCGCCGCG-CTCTACTTCATGCGTCCCCA 59 Query 24916 CCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTGTCCCTGTACCGCTG 24975 | || | | || || ||||| |||||||||||||| |||||| | || |||||| Sbjct 60 GGCCGCGCCAGTTGAAGTCCTCAATGACATCAACGGCGATCTGGTGACGCTTTACCGCGT 119 Query 24976 CGTGCGCCACCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCCCTGGTCTCGCGACA 25035 ||||| |||||||||| || ||||||||| |||| ||| | || || || || Sbjct 120 CGTGCAGAACCACCTGGAAGAATTCGTGCGCCAGTTCAAATGGGCGCTCAGTTCCCGCCA 179 Query 25036 GATGTTCGAGTGGGCACAGATGGAGCGCCCGGAGACGCTGACCGACATCCAGCGCGCAGC 25095 | ||||||||||| ||||| ||||| || || || ||||||||||||||||| || Sbjct 180 GGTGTTCGAGTGGCAGAAGATGACCCGCCCTGAAACCCTCACCGACATCCAGCGCGCCGC 239 Query 25096 GCGGTTCTACTACCTGCAAAAGCTGGCATTCGGCGGCAAGGTGCAGGGGCAATCGTTCGG 25155 || || | ||||||||| | | || || | ||||||||| |||||| ||||||| Sbjct 240 CCGTTTTTTCTACCTGCAGCACCACGCCTTTGCTGGCAAGGTGACGGGGCAGACGTTCGG 299 >seq3088442 Length=12812 Score = 145 bits (160), Expect = 2e-30 Identities = 248/356 (70%), Gaps = 3/356 (1%) Strand=Plus/Minus Query 24782 ATGCCAAAGCCAATCATTTCCTGGCCGGGCGGCAAGCGCCGCCTCCTGAAGCACCTCTAT 24841 ||| |||| |||||| || | ||| ||||||||||||||| || ||||| ||| Sbjct 11229 ATGACAAACCCAATCGTTCCATGGATGGGCGGCAAGCGCCGTCTTTCGAAGCGCCTGCTG 11170 Query 24842 CCGCACTTCCCGACCCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTG 24901 ||| ||||| |||||| ||||||||||| | || |||||||| || ||| || Sbjct 11169 GCGCTGTTCCCAGACCACGAGTGCTACGTCGAAGTGTTTGCCGGCGGCGCTGCGCTGTAC 11110 Query 24902 CTTATGCGGCCGTACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTG 24961 | | ||| | | || ||| | | ||||| | || || |||| ||||| |||||| Sbjct 11109 TTCAAGCGAGAGCAGCCCGCAAAAGTCGAGGTTTTGAATGATCTCAA-GGCGACCTGGTG 11051 Query 24962 TCCCTGTACCGCTGCGTGCGCCACCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCC 25021 | ||||||| || | |||||||| || |||||||| || |||| ||| | Sbjct 11050 AACTTGTACCGTGTAGTCCAGCACCACCTTGAGGAGTTCGTTCGTCAGTTCAAGTGGGCA 10991 Query 25022 CTGGTCTCGCGACAGATGTTCGAGTGGGCACAGATG-GAGCGCCCGGAGACGCTGACCGA 25080 || ||| |||||||| ||||||||| | ||||| |||| || ||||| ||||| || Sbjct 10990 CTCAGCTCCCGACAGATCTTCGAGTGGCAAAAGATGACAGCGGCC-GAGACACTGACGGA 10932 Query 25081 CATCCAGCGCGCAGCGCGGTTCTACTACCTGCAAAAGCTGGCATTCGGCGGCAAGG 25136 |||||| || || | |||| | |||| ||| | | || ||||| | |||| Sbjct 10931 TATCCAGAAAGCGGCCAGATTCTTCAACCTCCAACACCACGCGTTCGGTGCAAAGG 10876 >seq2997156 Length=646 Score = 141 bits (156), Expect = 2e-29 Identities = 244/350 (70%), Gaps = 16/350 (5%) Strand=Plus/Minus Query 24808 GGGCGGCAAGCGCCGCCTCCTGAAGCACCTCTATCC-GCACTTCCCGACCCACGACTGCT 24866 ||||||||| |||||||| | | ||| ||||| || |||||| | ||||| |||| Sbjct 643 GGGCGGCAAACGCCGCCTGGCCGACCGCCT-TATCCCGCTCTTCCCACCTCACGAATGCT 585 Query 24867 ACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTGCTT-ATGCGGCCGTACCCAGCACAG 24925 | || || | || |||||||| || ||| | | ||| ||||| || | | || | Sbjct 584 ATGTTGAAGTCTTTGCCGGCGGCGCTGCG-CTCTACTTCATGCGTCCCCAGGCCGCGCC- 527 Query 24926 ATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTGTCCCTGTACCGCTGCGTGCGCCAC 24985 || || | ||| |||||| |||||| | || |||||| ||||| || Sbjct 526 ----AGTTG-------AAATCCTCGGCGATCTGGTGACGCTTTACCGCGTCGTGCAGAAC 478 Query 24986 CACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCCCTGGTCTCGCGACAGATGTTCGAG 25045 |||||||| || ||||||||| |||| ||| | || ||||| ||| |||||||| Sbjct 477 CACCTGGAGGAATTCGTGCGCCAGTTCAAATGGGCGCTCAGTTCGCGCCAGGTGTTCGAG 418 Query 25046 TGGGCACAGATGGAGCGCCCGGAGACGCTGACCGACATCCAGCGCGCAGCGCGGTTCTAC 25105 ||| ||||| ||| |||| || || ||||||||||| ||||| || || |||| Sbjct 417 TGGCAGAAGATGACCCGCACGGAAACCCTCACCGACATCCAACGCGCCGCCCGTTTCTTT 358 Query 25106 TACCTGCAAAAGCTGGCATTCGGCGGCAAGGTGCAGGGGCAATCGTTCGG 25155 |||||||| | | ||||||| |||||| ||| ||||| |||| || Sbjct 357 TACCTGCAGCACCATGCATTCGCCGGCAAAGTGACCGGGCAGACGTTTGG 308 >seq2743190 Length=211 Score = 120 bits (132), Expect = 8e-23 Identities = 126/163 (77%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 28632 GTTGTAGGCCCGGCCGTTGGGATCCTTCACCGCGTGAGCAAGCTGGTGCTCGATGATGTC 28691 |||||||||||| ||| ||||||||||| |||||||| ||||| ||||||||| ||| Sbjct 208 GTTGTAGGCCCGCCCGAGCGGATCCTTCACGGCGTGAGCGAGCTGATGCTCGATGTAGTC 149 Query 28692 CGGGCGGAAGTGCAGGACCTCGTCCAGAATGGTGCGAGCCGTCGCGCGGAAGCCGTGGCC 28751 ||| || || || || |||||||| | || | ||| |||| |||||||| ||||| Sbjct 148 CGGACGATAGCCGAGCACTTCGTCCAGCACCGTTCTTGCCATCGCTCGGAAGCCATGGCC 89 Query 28752 GGTCATCATCGTGCG-GTCGTAACCCATGTTGCGCAGCGCTGC 28793 | |||| | || || |||| |||| | ||| |||| |||||| Sbjct 88 GACCATCGT-GTCCGAGTCGAAACCAAGGTTACGCAACGCTGC 47 >seq2379709 Length=148 Score = 104 bits (114), Expect = 6e-18 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 24967 GTACCGCTGCGTGCGCCACCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCCCTGGT 25026 ||||||| ||||| |||||||||| || ||||| ||| |||| ||| | || Sbjct 1 GTACCGCGTCGTGCAGAACCACCTGGAAGAATTCGTCCGCCAGTTCAAATGGGCGCTCAG 60 Query 25027 CTCGCGACAGATGTTCGAGTGGGCACAGATGGAGCGCCCGGAGACGCTGACCGACATCCA 25086 || || ||| ||||||||||| | ||||| |||||||| || || ||||||||||| Sbjct 61 TTCCCGCCAGGTGTTCGAGTGGCAAAAGATGACCCGCCCGGAAACCCTCACCGACATCCA 120 Query 25087 GCGCGCAGCGCGGTTCTACTACCTGCA 25113 |||||| || || |||| |||||||| Sbjct 121 GCGCGCCGCCCGATTCTTTTACCTGCA 147 >seq2419957 Length=154 Score = 84.2 bits (92), Expect = 5e-12 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 24842 CCGCACTTCCCGACCCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTG 24901 |||| || ||| | ||||| |||||||| || | || |||||||| |||||| | | Sbjct 145 CCGCTTTTTCCGCCACACGAATGCTACGTTGAAGTCTTTGCCGGCGGCGCCGCG-CTCTA 87 Query 24902 CTT-ATGCGGCCGTACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGT 24960 ||| ||||| || | |||| | | || || || ||||||||||||||||| ||||| Sbjct 86 CTTCATGCGTCCCCAAGCAGCGCCTGTTGAAGTTCTTAACGACATCAACGGCGACCTGGT 27 Query 24961 GTCCCTGTACCGCTGCGTGC 24980 | ||||||||| ||||| Sbjct 26 CACGCTGTACCGCGTCGTGC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124073039788918