Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq156999 96.9 8e-16 >seq156999 Length=6365 Score = 96.9 bits (106), Expect = 8e-16 Identities = 173/248 (70%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 11530 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACT 11589 |||| |||||| | || ||| ||||||||||||||||| | || |||| | | Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992 Query 11590 GGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACACCG 11649 |||| ||||||||| || | | ||| | | ||| || |||||||| || || || Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052 Query 11650 CGCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTATC-GCA-AGGTCCACGG 11707 | | ||||| ||||||||||||| ||| ||||||||| ||| | ||| | | || || Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAG--CATGG 4110 Query 11708 CCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCATCCAACGAGAACGACACCCG 11767 ||| || || | | | ||| |||||||| ||||| |||||||||||| Sbjct 4111 GCTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGC 4170 Query 11768 CGCATATG 11775 ||| |||| Sbjct 4171 CGCCTATG 4178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113585910136954