Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_011613.1
Length=36632
Score E
Sequences producing significant alignments: (Bits) Value
seq3084660 154 3e-33
seq3087822 129 1e-25
seq3088451 91.5 3e-14
seq156999 87.8 4e-13
>seq3084660
Length=3030
Score = 154 bits (170), Expect = 3e-33
Identities = 156/198 (79%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 25376 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25435
||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||
Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141
Query 25436 CCGACGAACCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCC 25494
| ||||| |||||||| || || || || ||| |||||| | || ||||||||||| |||
Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGC-GCTAAACGAGCAGTACCACTACCTGACTGCC 2082
Query 25495 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGGGTGCCGCCCA 25553
||||||||| ||| || | || || || ||||||||||| |||| || | || |
Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCT-GGCGTCGTGAA 2023
Query 25554 GCTGGCCATGGATGCCTA 25571
||| || | ||||||||
Sbjct 2022 GCTCGCGACCGATGCCTA 2005
>seq3087822
Length=6084
Score = 129 bits (142), Expect = 1e-25
Identities = 147/192 (77%), Gaps = 4/192 (2%)
Strand=Plus/Minus
Query 25376 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25435
|||||||||| || ||||||||||| || || |||||||| ||||||||||| ||||
Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183
Query 25436 CCGACGAACCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCC 25494
| ||||| |||||||| || || || || ||| || ||| |||| || |||||||| |||
Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGC-GCTTAATGAGCAATACCATTACCTGACTGCC 5124
Query 25495 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGGGTGCCGCCCA 25553
|||||||| ||| || | || || || || |||||| || ||| ||| || | |
Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAATCACGC-GGGCGCTGTGAA 5065
Query 25554 GCTGGCCATGGA 25565
|||||| | |||
Sbjct 5064 GCTGGCGACGGA 5053
>seq3088451
Length=13260
Score = 91.5 bits (100), Expect = 3e-14
Identities = 206/300 (69%), Gaps = 10/300 (3%)
Strand=Plus/Plus
Query 26227 AACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTACTGA-GCTATGCGGACTA 26285
|||||| || || | || ||||||||||| || ||| | | ||| | |||||||
Sbjct 7376 AACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGACTA 7434
Query 26286 TGTCGCGCAGCGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTATG 26344
| ||| || | ||| | |||||| |||| | |||||| | || || || || ||
Sbjct 7435 CGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTACC 7493
Query 26345 AGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCCCA 26402
||| || ||| | || ||||||||| | || | |||| ||| ||| |||| ||
Sbjct 7494 AGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCTCA 7551
Query 26403 GCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCACAGAA 26462
| | ||| |||||||| ||||||||||| || || | ||||||||||| |||||
Sbjct 7552 GAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAGAA 7611
Query 26463 GAAGGCCGACGCCGACCTGGAAGTC-CTCCAGCTCAACGAACAGGGCCGCCTGAAGAAAC 26521
| | || ||| | | ||| ||| | || | |||||| | ||||||||| || |||
Sbjct 7612 GGATGCTGACAGCCAGCTGACCGTCATTGCAAC-GAACGAAAAAGGCCGCCTGGAGCAAC 7670
>seq156999
Length=6365
Score = 87.8 bits (96), Expect = 4e-13
Identities = 118/163 (72%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 10888 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACT 10947
|||| |||||| | || ||| ||||||||||||||||| | || |||| | |
Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992
Query 10948 GGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACACCG 11007
|||| ||||||||| || | | ||| | | ||| || |||||||| || || ||
Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052
Query 11008 CGCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTA 11050
| | ||||| ||||||||||||| ||| ||||||||| |||
Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTA 4095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 112806003081708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |