Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_011613.1 Length=36632 Score E Sequences producing significant alignments: (Bits) Value seq3084660 154 3e-33 seq3087822 129 1e-25 seq3088451 91.5 3e-14 seq156999 87.8 4e-13 >seq3084660 Length=3030 Score = 154 bits (170), Expect = 3e-33 Identities = 156/198 (79%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 25376 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25435 ||||||||||||||||||||||||| || || ||||| |||||||| |||||||||| Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141 Query 25436 CCGACGAACCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCC 25494 | ||||| |||||||| || || || || ||| |||||| | || ||||||||||| ||| Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGC-GCTAAACGAGCAGTACCACTACCTGACTGCC 2082 Query 25495 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGGGTGCCGCCCA 25553 ||||||||| ||| || | || || || ||||||||||| |||| || | || | Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCT-GGCGTCGTGAA 2023 Query 25554 GCTGGCCATGGATGCCTA 25571 ||| || | |||||||| Sbjct 2022 GCTCGCGACCGATGCCTA 2005 >seq3087822 Length=6084 Score = 129 bits (142), Expect = 1e-25 Identities = 147/192 (77%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 25376 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25435 |||||||||| || ||||||||||| || || |||||||| ||||||||||| |||| Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183 Query 25436 CCGACGAACCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCC 25494 | ||||| |||||||| || || || || ||| || ||| |||| || |||||||| ||| Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGC-GCTTAATGAGCAATACCATTACCTGACTGCC 5124 Query 25495 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGGGTGCCGCCCA 25553 |||||||| ||| || | || || || || |||||| || ||| ||| || | | Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAATCACGC-GGGCGCTGTGAA 5065 Query 25554 GCTGGCCATGGA 25565 |||||| | ||| Sbjct 5064 GCTGGCGACGGA 5053 >seq3088451 Length=13260 Score = 91.5 bits (100), Expect = 3e-14 Identities = 206/300 (69%), Gaps = 10/300 (3%) Strand=Plus/Plus Query 26227 AACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTACTGA-GCTATGCGGACTA 26285 |||||| || || | || ||||||||||| || ||| | | ||| | ||||||| Sbjct 7376 AACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGACTA 7434 Query 26286 TGTCGCGCAGCGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTATG 26344 | ||| || | ||| | |||||| |||| | |||||| | || || || || || Sbjct 7435 CGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTACC 7493 Query 26345 AGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCCCA 26402 ||| || ||| | || ||||||||| | || | |||| ||| ||| |||| || Sbjct 7494 AGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCTCA 7551 Query 26403 GCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCACAGAA 26462 | | ||| |||||||| ||||||||||| || || | ||||||||||| ||||| Sbjct 7552 GAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAGAA 7611 Query 26463 GAAGGCCGACGCCGACCTGGAAGTC-CTCCAGCTCAACGAACAGGGCCGCCTGAAGAAAC 26521 | | || ||| | | ||| ||| | || | |||||| | ||||||||| || ||| Sbjct 7612 GGATGCTGACAGCCAGCTGACCGTCATTGCAAC-GAACGAAAAAGGCCGCCTGGAGCAAC 7670 >seq156999 Length=6365 Score = 87.8 bits (96), Expect = 4e-13 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 10888 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACT 10947 |||| |||||| | || ||| ||||||||||||||||| | || |||| | | Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992 Query 10948 GGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACACCG 11007 |||| ||||||||| || | | ||| | | ||| || |||||||| || || || Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052 Query 11008 CGCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTA 11050 | | ||||| ||||||||||||| ||| ||||||||| ||| Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTA 4095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112806003081708