Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq155098 86.0 6e-12 >seq155098 Length=7669 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || |||||| | ||| | || ||||| |||||||| |||| || Sbjct 7208 GCACCACCAAGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCA 7267 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || || ||||| |||||| | ||||| || ||| Sbjct 7268 GACAAAGTACGTTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGA 7327 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || |||| ||| Sbjct 7328 GGAATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCG 7387 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || ||||| || || |||||||||||||| Sbjct 7388 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 457143431858640