Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq3088273 145 3e-30 seq295506 93.3 2e-14 >seq3088273 Length=8614 Score = 145 bits (160), Expect = 3e-30 Identities = 295/426 (69%), Gaps = 18/426 (4%) Strand=Plus/Plus Query 24432 CCGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTG 24491 ||| ||| |||||||||| || |||||||| || ||||| || ||| | |||||| || Sbjct 3299 CCGGAACATCATCCTGAAAGCTCGCCAGCTGGGGTTTACGACGCTGGTGTGCATCGTCCA 3358 Query 24492 GCTCGACCACGCGCTGTTCAACGCGAACAGCCGGTGCGGCATCATCGCCCAGA-ACCGCG 24550 | | || ||| ||||| | || || ||||| | | ||||| || | || | Sbjct 3359 GTTGGATGCAGCGTTGTTCGAGGCTGCCAA---GTGCGCCTTGATCGCTCACACACTGAA 3415 Query 24551 AGACGGCCGAGGCGATCTTTC-GGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAG 24609 |||| ||| ||| |||| |||| |||||||| | |||||||||||| ||||| || Sbjct 3416 CGACG--CGAAGCGCCTTTTCCGGGAAAAGGTGAAATACGCCTACGACAATCTGCCGAAG 3473 Query 24610 GCGCTGCGCGACGCGATGCCGCTCGCCAACTGCACGCAGTCTGAGA--TGCTGTTCGGGC 24667 | ||| |||| || | ||| ||| | | |||| | | | || || ||||| | Sbjct 3474 GAGCTTCGCGCTGCCAACCCGG-CGCGGAACG-ACGCGGCCGGCGAGCTGGTGTTCAG-- 3529 Query 24668 ACAACAACAGCTCGATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCGCCTGC 24727 ||| | | ||| | ||| | || ||| | || ||||||||| | | | ||||| Sbjct 3530 -CAAGGGCGGTTCGCTTTACGTTTCCACCTCGTTCCGTGGCGGCACGCTGCGCTACCTGC 3588 Query 24728 ACGTCTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGATCGTGA 24787 |||| |||||||||||||||||||| ||| || |||| ||||| ||||||||| | Sbjct 3589 ACGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGGGAGATCGTCA 3648 Query 24788 CCGGCTCGATCCCGGCCGT-GCCGAAGTCGGGCATTC-TGGTCATCGAGTCGACGGCCGA 24845 ||||| | || ||| || |||| | | ||| | ||||||||||||||| || Sbjct 3649 CCGGCGCCTTCGAGGCTGTCGCCGCTGAATG--TTTCGTCACCATCGAGTCGACGGCAGA 3706 Query 24846 GGGCCG 24851 ||||| Sbjct 3707 AGGCCG 3712 >seq295506 Length=3618 Score = 93.3 bits (102), Expect = 2e-14 Identities = 140/195 (72%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 24433 CGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTGG 24492 |||||| | ||| |||||||| | ||||| |||||||||||| | |||||||||| Sbjct 1554 CGCAACCTGATCTTGAAGGCCAGGCAGCTTGGCTTTACCACCGAGTGCTGCATCATCCAA 1495 Query 24493 CTCGACCACGCGCTGTTCAACGCGAACAGCC-GGTGCGGCATCATCGCCCAGAACC-GCG 24550 || ||| || || ||| | ||||| ||||| | | |||||||| | || | Sbjct 1494 CTGGACGCGGCTCTATTCGA----GTCAGCCAAGTGCGCCCTGATCGCCCACACCCTGAA 1439 Query 24551 AGACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAGG 24610 ||| ||| || | || ||||| |||||||||| |||||||||||| ||||| | | Sbjct 1438 CGAC-GCCAAGCGCCTGTTCCGGGAGAAGGTGAAGTACGCCTACGACAATCTGCCGAAAG 1380 Query 24611 CGCTGCGCGACGCGA 24625 | | |||| ||||| Sbjct 1379 AGATCCGCGCCGCGA 1365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193210413050014