Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_012743.2
Length=62715
Score E
Sequences producing significant alignments: (Bits) Value
seq3088273 145 3e-30
seq295506 93.3 2e-14
>seq3088273
Length=8614
Score = 145 bits (160), Expect = 3e-30
Identities = 295/426 (69%), Gaps = 18/426 (4%)
Strand=Plus/Plus
Query 24432 CCGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTG 24491
||| ||| |||||||||| || |||||||| || ||||| || ||| | |||||| ||
Sbjct 3299 CCGGAACATCATCCTGAAAGCTCGCCAGCTGGGGTTTACGACGCTGGTGTGCATCGTCCA 3358
Query 24492 GCTCGACCACGCGCTGTTCAACGCGAACAGCCGGTGCGGCATCATCGCCCAGA-ACCGCG 24550
| | || ||| ||||| | || || ||||| | | ||||| || | || |
Sbjct 3359 GTTGGATGCAGCGTTGTTCGAGGCTGCCAA---GTGCGCCTTGATCGCTCACACACTGAA 3415
Query 24551 AGACGGCCGAGGCGATCTTTC-GGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAG 24609
|||| ||| ||| |||| |||| |||||||| | |||||||||||| ||||| ||
Sbjct 3416 CGACG--CGAAGCGCCTTTTCCGGGAAAAGGTGAAATACGCCTACGACAATCTGCCGAAG 3473
Query 24610 GCGCTGCGCGACGCGATGCCGCTCGCCAACTGCACGCAGTCTGAGA--TGCTGTTCGGGC 24667
| ||| |||| || | ||| ||| | | |||| | | | || || ||||| |
Sbjct 3474 GAGCTTCGCGCTGCCAACCCGG-CGCGGAACG-ACGCGGCCGGCGAGCTGGTGTTCAG-- 3529
Query 24668 ACAACAACAGCTCGATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCGCCTGC 24727
||| | | ||| | ||| | || ||| | || ||||||||| | | | |||||
Sbjct 3530 -CAAGGGCGGTTCGCTTTACGTTTCCACCTCGTTCCGTGGCGGCACGCTGCGCTACCTGC 3588
Query 24728 ACGTCTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGATCGTGA 24787
|||| |||||||||||||||||||| ||| || |||| ||||| ||||||||| |
Sbjct 3589 ACGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGGGAGATCGTCA 3648
Query 24788 CCGGCTCGATCCCGGCCGT-GCCGAAGTCGGGCATTC-TGGTCATCGAGTCGACGGCCGA 24845
||||| | || ||| || |||| | | ||| | ||||||||||||||| ||
Sbjct 3649 CCGGCGCCTTCGAGGCTGTCGCCGCTGAATG--TTTCGTCACCATCGAGTCGACGGCAGA 3706
Query 24846 GGGCCG 24851
|||||
Sbjct 3707 AGGCCG 3712
>seq295506
Length=3618
Score = 93.3 bits (102), Expect = 2e-14
Identities = 140/195 (72%), Gaps = 7/195 (4%)
Strand=Plus/Minus
Query 24433 CGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTGG 24492
|||||| | ||| |||||||| | ||||| |||||||||||| | ||||||||||
Sbjct 1554 CGCAACCTGATCTTGAAGGCCAGGCAGCTTGGCTTTACCACCGAGTGCTGCATCATCCAA 1495
Query 24493 CTCGACCACGCGCTGTTCAACGCGAACAGCC-GGTGCGGCATCATCGCCCAGAACC-GCG 24550
|| ||| || || ||| | ||||| ||||| | | |||||||| | || |
Sbjct 1494 CTGGACGCGGCTCTATTCGA----GTCAGCCAAGTGCGCCCTGATCGCCCACACCCTGAA 1439
Query 24551 AGACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAGG 24610
||| ||| || | || ||||| |||||||||| |||||||||||| ||||| | |
Sbjct 1438 CGAC-GCCAAGCGCCTGTTCCGGGAGAAGGTGAAGTACGCCTACGACAATCTGCCGAAAG 1380
Query 24611 CGCTGCGCGACGCGA 24625
| | |||| |||||
Sbjct 1379 AGATCCGCGCCGCGA 1365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 193210413050014
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |