Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq324775 152 7e-32
seq185621 114 2e-20
>seq324775
Length=12802
Score = 152 bits (168), Expect = 7e-32
Identities = 176/237 (74%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785
|||||| | | || || ||||||||||| || |||||||| || || || ||||| ||
Sbjct 7380 GATTAGCCTGCTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAG 7321
Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845
||||| || || ||||||||||| | |||||| |||||||| |||||||| | ||| ||
Sbjct 7320 CACATCACACACTCTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGG 7261
Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905
||| | |||||| || || | ||||| ||||| || | || || || | || |
Sbjct 7260 CACCAGACCAAAGACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGTGG 7201
Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
|| | ||| | ||||| || |||||||| ||||| |||||||| || || | |||
Sbjct 7200 GTAGATCATTTCGACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAAT 7144
Score = 100 bits (110), Expect = 4e-16
Identities = 195/286 (68%), Gaps = 4/286 (1%)
Strand=Plus/Minus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||| | || || ||||| |||||||| || || | | || || | | | |||
Sbjct 7954 CCAGCATTTTGCCTGGTGAATGATTCAACGAACTGAGTGACACCATGTTCCAGTAAGATC 7895
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
||||| || || | || || | ||| | |||| | | | || ||||| | |||
Sbjct 7894 GAATTATTATAGATAAACTGCTGGTAGCTGTACTCTTGGCCATCAATCCGAAAGACGTCA 7835
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|||| || | ||||||| ||||||| || || ||||| || || || ||||| ||||||
Sbjct 7834 GGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATACGGTTTTGGTAC 7775
Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673
|| || | ||| ||| || | |||||||||||| | || | |||||| || || |
Sbjct 7774 TGGAACTGTTGGTT--GAAAAGCAGCTCCGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 7717
Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| | ||||| || || | | || | ||| ||||| ||||| ||
Sbjct 7716 TCAAGTGCTGTACGTAGTCTTCAATCACAATCTTAATAGTTTCTCC 7671
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/137 (76%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | || || ||||||||| || || || || |||| ||| ||
Sbjct 5528 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCGGGCACGGGGGGAAGAGCTCTGGTG 5469
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| || || ||||| ||||||||||| || |||| || | | || || ||
Sbjct 5468 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATA-AGT 5410
Query 10507 GGG-GGACTGTCAATCA 10522
||| |||||||||||||
Sbjct 5409 GGGCGGACTGTCAATCA 5393
Score = 89.7 bits (98), Expect = 7e-13
Identities = 126/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| | ||| | |||||||| |||||||| | | ||| ||| | ||
Sbjct 6349 TCTTACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 6290
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| || ||||| ||||||||
Sbjct 6289 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 6230
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
|| || || | || | | || ||||| | ||||| | | ||||||| || ||
Sbjct 6229 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTTGAATCAGGAAG 6173
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| |||| ||||| | |||| || || || || ||||| || || ||| |
Sbjct 4445 CTTACGCGTCGTACAGTTTTCACCATAGAATCCTGTTCGGGTACAGTCACATTTATACTG 4386
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
||||| || || |||| ||||| |||||||||||||| || || ||||||||||| ||
Sbjct 4385 GTCAAATCCTACACTCATACATACACCTCGATTCTGGCATGGATGGGAACAGCAAGGATT 4326
Query 10960 GGCTGCAA 10967
||| |||
Sbjct 4325 TGCTACAA 4318
Score = 84.2 bits (92), Expect = 3e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 9963 AACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGT 10022
||||||||| ||||| || ||||||||||| || |||||||||||||| |||| || |
Sbjct 7032 AACCTGATATTTCATTTTTCCATCCTTGAAAAGGCGCAGCTTATGCTGTCTCTCTAAAGA 6973
Query 10023 TTCGCCGTAGATGTGACTGAGATCGACCT 10051
||| || || |||||||| | || ||||
Sbjct 6972 TTCACCATAAATGTGACTTAAGTCCACCT 6944
>seq185621
Length=19746
Score = 114 bits (126), Expect = 2e-20
Identities = 178/252 (71%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || || | || || || || || || || || ||||| | |||||||||
Sbjct 7646 GTGGCCGTCTTGACAAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGCCTTCCAGTAC 7705
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
| || || |||||| |||| | | || || || | |||||| |||||||| | ||
Sbjct 7706 TCTGGAGAACAGATGGGGTTCCCTAATAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCT 7765
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111
|| |||||||| || ||||||| | ||| | || || | || | |||| | |||
Sbjct 7766 ATCATGCTCTCCCCAAAGATGGAGCTCGGATGGCACTTCTCAA-GAAGCAGCCCTGGGTA 7824
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| ||| | ||| |||| ||| || || || | ||||| || || || |||||||||||
Sbjct 7825 GAATTCCAAAGCATCGATGTCTCCGTATAGCTCCTCCAATTCAGCTGCCATCTCCTTCTC 7884
Query 9172 ACCTACAAGCGC 9183
|||| |||| ||
Sbjct 7885 ACCTGCAAGAGC 7896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 695787476387400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |