Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq324775 152 7e-32 seq185621 114 2e-20 >seq324775 Length=12802 Score = 152 bits (168), Expect = 7e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 |||||| | | || || ||||||||||| || |||||||| || || || ||||| || Sbjct 7380 GATTAGCCTGCTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAG 7321 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 ||||| || || ||||||||||| | |||||| |||||||| |||||||| | ||| || Sbjct 7320 CACATCACACACTCTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGG 7261 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 ||| | |||||| || || | ||||| ||||| || | || || || | || | Sbjct 7260 CACCAGACCAAAGACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGTGG 7201 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | ||||| || |||||||| ||||| |||||||| || || | ||| Sbjct 7200 GTAGATCATTTCGACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAAT 7144 Score = 100 bits (110), Expect = 4e-16 Identities = 195/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||| | || || ||||| |||||||| || || | | || || | | | ||| Sbjct 7954 CCAGCATTTTGCCTGGTGAATGATTCAACGAACTGAGTGACACCATGTTCCAGTAAGATC 7895 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 ||||| || || | || || | ||| | |||| | | | || ||||| | ||| Sbjct 7894 GAATTATTATAGATAAACTGCTGGTAGCTGTACTCTTGGCCATCAATCCGAAAGACGTCA 7835 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| || || ||||| || || || ||||| |||||| Sbjct 7834 GGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATACGGTTTTGGTAC 7775 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | |||||||||||| | || | |||||| || || | Sbjct 7774 TGGAACTGTTGGTT--GAAAAGCAGCTCCGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 7717 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||| || || | | || | ||| ||||| ||||| || Sbjct 7716 TCAAGTGCTGTACGTAGTCTTCAATCACAATCTTAATAGTTTCTCC 7671 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| || || || || |||| ||| || Sbjct 5528 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCGGGCACGGGGGGAAGAGCTCTGGTG 5469 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || ||||| ||||||||||| || |||| || | | || || || Sbjct 5468 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATA-AGT 5410 Query 10507 GGG-GGACTGTCAATCA 10522 ||| ||||||||||||| Sbjct 5409 GGGCGGACTGTCAATCA 5393 Score = 89.7 bits (98), Expect = 7e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| | ||| | |||||||| |||||||| | | ||| ||| | || Sbjct 6349 TCTTACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 6290 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || ||||| |||||||| Sbjct 6289 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 6230 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || ||||| | ||||| | | ||||||| || || Sbjct 6229 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTTGAATCAGGAAG 6173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| |||| ||||| | |||| || || || || ||||| || || ||| | Sbjct 4445 CTTACGCGTCGTACAGTTTTCACCATAGAATCCTGTTCGGGTACAGTCACATTTATACTG 4386 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| || || |||| ||||| |||||||||||||| || || ||||||||||| || Sbjct 4385 GTCAAATCCTACACTCATACATACACCTCGATTCTGGCATGGATGGGAACAGCAAGGATT 4326 Query 10960 GGCTGCAA 10967 ||| ||| Sbjct 4325 TGCTACAA 4318 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 9963 AACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGT 10022 ||||||||| ||||| || ||||||||||| || |||||||||||||| |||| || | Sbjct 7032 AACCTGATATTTCATTTTTCCATCCTTGAAAAGGCGCAGCTTATGCTGTCTCTCTAAAGA 6973 Query 10023 TTCGCCGTAGATGTGACTGAGATCGACCT 10051 ||| || || |||||||| | || |||| Sbjct 6972 TTCACCATAAATGTGACTTAAGTCCACCT 6944 >seq185621 Length=19746 Score = 114 bits (126), Expect = 2e-20 Identities = 178/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || || || || || || || || ||||| | ||||||||| Sbjct 7646 GTGGCCGTCTTGACAAGGTTGAAGCCCACCTCACCACCAAATGTGCTTGCCTTCCAGTAC 7705 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| |||| | | || || || | |||||| |||||||| | || Sbjct 7706 TCTGGAGAACAGATGGGGTTCCCTAATAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCT 7765 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || |||||||| || ||||||| | ||| | || || | || | |||| | ||| Sbjct 7766 ATCATGCTCTCCCCAAAGATGGAGCTCGGATGGCACTTCTCAA-GAAGCAGCCCTGGGTA 7824 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | ||| |||| ||| || || || | ||||| || || || ||||||||||| Sbjct 7825 GAATTCCAAAGCATCGATGTCTCCGTATAGCTCCTCCAATTCAGCTGCCATCTCCTTCTC 7884 Query 9172 ACCTACAAGCGC 9183 |||| |||| || Sbjct 7885 ACCTGCAAGAGC 7896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 695787476387400