Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3058874 98.7 1e-15 >seq3058874 Length=1308 Score = 98.7 bits (108), Expect = 1e-15 Identities = 251/372 (67%), Gaps = 14/372 (4%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || ||||| || || || || ||| || | || ||||| || || Sbjct 460 CGGTCAAAACGGCCTGGACGCAGCAGCGCAGGGTCCAGTACGTCCGGACGGTTGGTTGCG 519 Query 12762 GCGATGACAACGATGCCCGTC-TCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820 |||||||| | |||||| ||| | | ||||| || |||||||| || | || || Sbjct 520 GCGATGACGATGATGCC-GTCATTCATCTCGAAACCGTCCATCTCCACCAGTAACTGGTT 578 Query 12821 GATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCG 12878 || ||| |||||||| || |||| || || ||| || || | || || ||| Sbjct 579 GAGGGTCTGTTCACGCTCGTCATGACCGC-CAC-CCATGCCGGCGCCACGATGGCGACCC 636 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGT---TGATTTTCACGGGCAACTTCA 12935 ||||| || |||||||||||||| | ||| || || || || | ||| ||| Sbjct 637 ACGGCATCGATTTCGTCAATGAAGATGATGCATGGCGCGTGCTTCTT---GGCCTGTTCG 693 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || ||||| || || | ||||||||||||| || |||||||| ||||| | | || Sbjct 694 AACATATCGCGAACACGGCTGGCACCGACACCGACGAACATCTCGACAAAGTCAGAACCG 753 Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 ||| || | | ||| || || |||| ||| || || || || ||| || | ||| || Sbjct 754 GAA-ATGGTAAAGAACGGCACTTTGGCTTCGCCGGCAATCGCCTTGGCCAGCAAGGTTTT 812 Query 13055 CCCCGTCCCTGG 13066 || || || || Sbjct 813 ACCGGTACCCGG 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589821903302760