Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq3058874 98.7 1e-15
>seq3058874
Length=1308
Score = 98.7 bits (108), Expect = 1e-15
Identities = 251/372 (67%), Gaps = 14/372 (4%)
Strand=Plus/Plus
Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761
|| ||||| || ||||| || || || || ||| || | || ||||| || ||
Sbjct 460 CGGTCAAAACGGCCTGGACGCAGCAGCGCAGGGTCCAGTACGTCCGGACGGTTGGTTGCG 519
Query 12762 GCGATGACAACGATGCCCGTC-TCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820
|||||||| | |||||| ||| | | ||||| || |||||||| || | || ||
Sbjct 520 GCGATGACGATGATGCC-GTCATTCATCTCGAAACCGTCCATCTCCACCAGTAACTGGTT 578
Query 12821 GATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCG 12878
|| ||| |||||||| || |||| || || ||| || || | || || |||
Sbjct 579 GAGGGTCTGTTCACGCTCGTCATGACCGC-CAC-CCATGCCGGCGCCACGATGGCGACCC 636
Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGT---TGATTTTCACGGGCAACTTCA 12935
||||| || |||||||||||||| | ||| || || || || | ||| |||
Sbjct 637 ACGGCATCGATTTCGTCAATGAAGATGATGCATGGCGCGTGCTTCTT---GGCCTGTTCG 693
Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995
|| ||||| || || | ||||||||||||| || |||||||| ||||| | | ||
Sbjct 694 AACATATCGCGAACACGGCTGGCACCGACACCGACGAACATCTCGACAAAGTCAGAACCG 753
Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054
||| || | | ||| || || |||| ||| || || || || ||| || | ||| ||
Sbjct 754 GAA-ATGGTAAAGAACGGCACTTTGGCTTCGCCGGCAATCGCCTTGGCCAGCAAGGTTTT 812
Query 13055 CCCCGTCCCTGG 13066
|| || || ||
Sbjct 813 ACCGGTACCCGG 824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589821903302760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |