Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_013600.1 Length=45169 Score E Sequences producing significant alignments: (Bits) Value seq3088451 105 2e-18 >seq3088451 Length=13260 Score = 105 bits (116), Expect = 2e-18 Identities = 180/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 17666 ATCGACGCCCGCCTGCGCTACCCGCTAACCGCGCTGTTATTCGTGGAGTTCGACGCTAAA 17725 |||||||| ||||||||||| ||||||||| | ||||| ||||||||||| | Sbjct 11832 ATCGACGCAAAGCTGCGCTACCCAAACACCGCGCTGCTGTTCGTCGAGTTCGACGCCGAG 11891 Query 17726 GCGTTCCAGAACATCCCGCGCGTTTCCATTAAGTGCAAAGGCCGCAAAGTGCTGGTTCCG 17785 |||| |||||| ||| ||| || | ||||| || | ||| || ||| ||| Sbjct 11892 CAGTTCACGAACATTCCGGCCGTGACCGTGAAGTGTAAGGCGCGCCGGTGGCAGGTGCCG 11951 Query 17786 AACAACTACGACCCGATCAACCATACCTATTCGGGCGACTGGGACGGGACGTTTAAACGC 17845 | ||||||||| ||| | || ||||| || |||| ||||||||| || | ||| Sbjct 11952 AGCAACTACGATCCGGTGGCCCGCACCTACTCCGGCGCCTGGGACGGCACCATGAAAGAG 12011 Query 17846 GCATGGACGGATAACCCTGCGTGGCACTGGTATGATATTTGTATTACTGAGCGCTTCGGC 17905 || ||||| ||||||| || ||| | || | || || | || || || || Sbjct 12012 GCCTGGACCAATAACCCGGCCTGGATCACCTACGGCATCTGCACCCAAGACCGTTTTGGT 12071 Query 17906 CTCGGTCGCCGGATCAAGCCG 17926 || || ||||| ||||||||| Sbjct 12072 CTGGGCCGCCGCATCAAGCCG 12092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139122471582242