Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq58757 93.3 6e-14 >seq58757 Length=22028 Score = 93.3 bits (102), Expect = 6e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | |||||| || ||||||| ||| || || || || || ||||| Sbjct 15923 CCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGTT 15982 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 || |||||||||||| || |||||| ||||| | || || ||||| |||| | ||| | Sbjct 15983 CAAAGACTGGCTTTGATCAATGAAA-GCGCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 16041 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || |||||||| ||||| Sbjct 16042 TCTGAGAGATTTCCCACACAGTCTT 16066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 764457130226160