Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq66256 143 6e-29
seq155098 140 7e-28
seq185925 125 2e-23
seq2709013 113 1e-19
seq2409662 113 1e-19
seq300236 111 4e-19
seq84207 104 5e-17
seq2278510 100 6e-16
seq1809803 100 6e-16
seq136426 86.0 1e-11
>seq66256
Length=6617
Score = 143 bits (158), Expect = 6e-29
Identities = 163/218 (75%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || ||| |||| || |||| |||||| |||| | ||| | ||||||
Sbjct 1628 AGGACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1569
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| | ||| |||||||| | ||||||||| || ||| ||||| |||
Sbjct 1568 TCCAGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 1509
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||||| |||| |||||| | | ||||| |||| ||||| |||
Sbjct 1508 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTC 1449
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || || || || ||||| || ||||| ||||||
Sbjct 1448 TTGCCGGTCAGGGTCTTCACGAAGATTTG---CATTTT 1414
>seq155098
Length=7669
Score = 140 bits (154), Expect = 7e-28
Identities = 161/217 (74%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469
||||||||| || || || ||||| ||||||||||| | | ||||||||| |||||| |
Sbjct 7218 GAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTAC 7277
Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
| |||||||||| ||||| || || ||||| || |||||||| ||| ||||||||
Sbjct 7278 GTTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTT 7337
Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589
| ||||| ||||| ||| || ||| | || || | | ||| || || | |
Sbjct 7338 CCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAG 7397
Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| ||||| ||||| || || ||||||||||| ||
Sbjct 7398 TGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTG 7434
>seq185925
Length=7279
Score = 125 bits (138), Expect = 2e-23
Identities = 158/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469
||||||||| || || || ||||| ||||||||||| | ||||||||||| ||||||
Sbjct 297 GAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAT 356
Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
|||||||||||| ||||| || || |||| | | |||||||| ||| ||||||||
Sbjct 357 GTCCATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTT 416
Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589
| ||||| ||||| ||| || ||| | || || | ||| || || | |
Sbjct 417 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAG 476
Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||| ||||| ||||| || || |||| ||||| ||
Sbjct 477 TGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTG 513
>seq2709013
Length=200
Score = 113 bits (124), Expect = 1e-19
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| || || || |||| ||||||||||| | ||||||||||| ||||||
Sbjct 11 CGAAGTCTCAACACTAGATGAAGAGGGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 70
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||| ||||| || || | ||| || | |||||||| ||| |||||||
Sbjct 71 CGTCCATCTTCCAGTTGCTTGCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 130
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| |||| ||||| ||| || ||| | || |||| | ||| | || |
Sbjct 131 TCCTTACCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAAGCTCGAGA 190
Query 199589 GTGATCGTCT 199598
||||| ||||
Sbjct 191 GTGATGGTCT 200
>seq2409662
Length=152
Score = 113 bits (124), Expect = 1e-19
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || |||||||| || |||| |||||| |||| | ||| | ||||||
Sbjct 16 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 75
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| |||||||| | ||||||||| || ||| ||||| |||
Sbjct 76 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 135
Query 199538 TGAATCTTTTGCTTCAC 199554
|| ||||| ||||||
Sbjct 136 TGGATCTTGGCCTTCAC 152
>seq300236
Length=7644
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| ||||| ||||| || |||| ||||||||||| | || | ||||||
Sbjct 7625 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCT 7566
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||| || || || ||||| | | ||||||||| ||| || || ||| ||
Sbjct 7565 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCTTTTTCT 7506
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || || | |||||| | | || || |||| ||||| ||
Sbjct 7505 TGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTT 7446
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || ||||| || ||
Sbjct 7445 TTACCAGTGAGGGTCTTTACAAAGATCTG 7417
>seq84207
Length=16436
Score = 104 bits (114), Expect = 5e-17
Identities = 154/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471
||||||| |||| || ||||| ||||| |||| | ||||||||||| |||||| | |
Sbjct 244 AGTCTCAACACAATATGAAGAGTGAACTCCCTTTGAATGTTGTAGTCAGACAAAGTACAT 185
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGA-TGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
||||||||||| ||||| || || |||| ||| | |||||||| ||| |||||||
Sbjct 184 CCATCTTCCAGTTGCTTGCCAGCAAAGACTGA-TCTTTGCTGGTCAGGAGGAATTCCT-- 128
Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590
||||| ||||| ||| || ||| ||| | | | | || | | ||
Sbjct 127 ----TCCTGGATCTTGGCCTTTACATTTTCTGTGGTATTCGAGGGCTTGACCTTGAGTGT 72
Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| ||||| ||||| || || ||||||||||| ||
Sbjct 71 GATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTG 36
>seq2278510
Length=135
Score = 100 bits (110), Expect = 6e-16
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 199431 GAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTC 199490
|||| ||||||||||| | ||||||||||| |||||| |||||||||||| ||||| |
Sbjct 1 GAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGC 60
Query 199491 CGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545
| || ||||| | | |||||||| ||| ||||||||| ||||| |||||
Sbjct 61 CAGCAAAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 115
>seq1809803
Length=127
Score = 100 bits (110), Expect = 6e-16
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 199431 GAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTC 199490
|||| ||||||||||| | ||||||||||| |||||| |||||||||||| ||||| |
Sbjct 1 GAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGC 60
Query 199491 CGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545
| | ||||| || | |||||||| ||| ||||||||| ||||| |||||
Sbjct 61 CAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 115
>seq136426
Length=23094
Score = 86.0 bits (94), Expect = 1e-11
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| | ||| ||||| ||||| || |||| ||||||||||| || || |||||
Sbjct 21287 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATC 21228
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
||||||||| || || || ||||| | | ||||||||||||
Sbjct 21227 TTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCCGG 21186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1132269848275237
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |