Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq66256 143 6e-29 seq155098 140 7e-28 seq185925 125 2e-23 seq2709013 113 1e-19 seq2409662 113 1e-19 seq300236 111 4e-19 seq84207 104 5e-17 seq2278510 100 6e-16 seq1809803 100 6e-16 seq136426 86.0 1e-11 >seq66256 Length=6617 Score = 143 bits (158), Expect = 6e-29 Identities = 163/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || ||| |||| || |||| |||||| |||| | ||| | |||||| Sbjct 1628 AGGACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1569 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| | ||| |||||||| | ||||||||| || ||| ||||| ||| Sbjct 1568 TCCAGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 1509 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | ||||| |||| ||||| ||| Sbjct 1508 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTC 1449 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || ||||| || ||||| |||||| Sbjct 1448 TTGCCGGTCAGGGTCTTCACGAAGATTTG---CATTTT 1414 >seq155098 Length=7669 Score = 140 bits (154), Expect = 7e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| || || || ||||| ||||||||||| | | ||||||||| |||||| | Sbjct 7218 GAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTAC 7277 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 | |||||||||| ||||| || || ||||| || |||||||| ||| |||||||| Sbjct 7278 GTTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTT 7337 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| ||| || ||| | || || | | ||| || || | | Sbjct 7338 CCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAG 7397 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| ||||| || || ||||||||||| || Sbjct 7398 TGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTG 7434 >seq185925 Length=7279 Score = 125 bits (138), Expect = 2e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| || || || ||||| ||||||||||| | ||||||||||| |||||| Sbjct 297 GAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAT 356 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || || |||| | | |||||||| ||| |||||||| Sbjct 357 GTCCATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTT 416 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| ||| || ||| | || || | ||| || || | | Sbjct 417 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAG 476 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| ||||| || || |||| ||||| || Sbjct 477 TGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTG 513 >seq2709013 Length=200 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || || |||| ||||||||||| | ||||||||||| |||||| Sbjct 11 CGAAGTCTCAACACTAGATGAAGAGGGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 70 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| ||||| || || | ||| || | |||||||| ||| ||||||| Sbjct 71 CGTCCATCTTCCAGTTGCTTGCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 130 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||| ||||| ||| || ||| | || |||| | ||| | || | Sbjct 131 TCCTTACCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAAGCTCGAGA 190 Query 199589 GTGATCGTCT 199598 ||||| |||| Sbjct 191 GTGATGGTCT 200 >seq2409662 Length=152 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || |||||||| || |||| |||||| |||| | ||| | |||||| Sbjct 16 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 75 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| |||||||| | ||||||||| || ||| ||||| ||| Sbjct 76 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 135 Query 199538 TGAATCTTTTGCTTCAC 199554 || ||||| |||||| Sbjct 136 TGGATCTTGGCCTTCAC 152 >seq300236 Length=7644 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| ||||| || |||| ||||||||||| | || | |||||| Sbjct 7625 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCT 7566 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || ||||| | | ||||||||| ||| || || ||| || Sbjct 7565 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCTTTTTCT 7506 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 7505 TGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTT 7446 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || Sbjct 7445 TTACCAGTGAGGGTCTTTACAAAGATCTG 7417 >seq84207 Length=16436 Score = 104 bits (114), Expect = 5e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||| |||| || ||||| ||||| |||| | ||||||||||| |||||| | | Sbjct 244 AGTCTCAACACAATATGAAGAGTGAACTCCCTTTGAATGTTGTAGTCAGACAAAGTACAT 185 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGA-TGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||| ||||| || || |||| ||| | |||||||| ||| ||||||| Sbjct 184 CCATCTTCCAGTTGCTTGCCAGCAAAGACTGA-TCTTTGCTGGTCAGGAGGAATTCCT-- 128 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| ||||| ||| || ||| ||| | | | | || | | || Sbjct 127 ----TCCTGGATCTTGGCCTTTACATTTTCTGTGGTATTCGAGGGCTTGACCTTGAGTGT 72 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| ||||| || || ||||||||||| || Sbjct 71 GATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTG 36 >seq2278510 Length=135 Score = 100 bits (110), Expect = 6e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 199431 GAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTC 199490 |||| ||||||||||| | ||||||||||| |||||| |||||||||||| ||||| | Sbjct 1 GAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGC 60 Query 199491 CGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 | || ||||| | | |||||||| ||| ||||||||| ||||| ||||| Sbjct 61 CAGCAAAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 115 >seq1809803 Length=127 Score = 100 bits (110), Expect = 6e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 199431 GAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTC 199490 |||| ||||||||||| | ||||||||||| |||||| |||||||||||| ||||| | Sbjct 1 GAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGC 60 Query 199491 CGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 | | ||||| || | |||||||| ||| ||||||||| ||||| ||||| Sbjct 61 CAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 115 >seq136426 Length=23094 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| ||||| ||||| || |||| ||||||||||| || || ||||| Sbjct 21287 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCCCATC 21228 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||| || || || ||||| | | |||||||||||| Sbjct 21227 TTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCCGG 21186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1132269848275237