Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq300236 118 1e-21 seq66256 118 1e-21 seq237091 82.4 8e-11 >seq300236 Length=7644 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||||| |||| || ||| || ||||| |||||||| || Sbjct 7640 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 7581 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || ||||| || || || || ||||| | ||||||||| | || Sbjct 7580 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGG 7521 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| || || |||||| ||||| || | | ||||| || | ||||| Sbjct 7520 ATGCCCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 7461 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||||||||| || || || || || |||||||| |||||| Sbjct 7460 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413 >seq66256 Length=6617 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || ||| || ||||| ||||| || || |||||||| | || || Sbjct 1625 ACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1566 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||||| ||| || || | | ||||||||| | || | || ||||| ||| | Sbjct 1565 AGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1506 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | ||||| || | || || |||| |||||||| ||| Sbjct 1505 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 1446 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || || || ||||||||||||||| Sbjct 1445 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 1413 >seq237091 Length=19548 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||| || ||||||||| | || || ||||| ||||| ||||| Sbjct 6791 CCTTTCTGGATATTGTAGTCTGACAGAGTGCGCCCATCCTCCAGCTGTTTGCCCGCGAAG 6850 Query 46463 ATCAAGCGCTGCTGGTC 46479 |||| ||||||||||| Sbjct 6851 ATCAGACGCTGCTGGTC 6867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543416587299720