Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq66256 118 1e-21 seq141641 116 4e-21 seq300236 114 1e-20 seq2409662 87.8 2e-12 seq1559739 84.2 2e-11 seq136426 84.2 2e-11 seq46653 84.2 2e-11 >seq66256 Length=6617 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 1414 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCC 1473 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || || || || |||||| | || Sbjct 1474 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 1532 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || |||| |||||||| || | ||||| || || || Sbjct 1533 CCAGCAGAGGCTCATCTTTGCCAGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 1592 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || || ||| ||||| |||| || | | |||| || ||| Sbjct 1593 CAACATCCAGAAAGAGTAGACCCTGCACCTGGTCCTTCATCTGAGGGGTGGC 1644 >seq141641 Length=332 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 133280 CCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGA 133339 ||| |||||| || || ||||| || || || || || || |||||||| || || | Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273 Query 133340 AATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCT 133399 ||| | ||| | |||| | ||||||| | |||||||||| |||||||||| Sbjct 272 AATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCT 213 Query 133400 CCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATT 133459 |||| | |||||||| || ||||| ||||| || ||||| ||| || || |||| Sbjct 212 CCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATT 153 Query 133460 GTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || ||||| || ||||| |||||||| ||||| Sbjct 152 TAATAGGAAAGATGACAAAGCGGCGGGGATTTTC 119 >seq300236 Length=7644 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || ||||| || ||||| || ||||||||||| | || || ||| ||| Sbjct 7413 AATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAG 7472 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || || | || |||||||| || || | ||||| Sbjct 7473 TGACACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAGGGCATCCCTCCAGACCA 7532 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||||| ||||||||||| || | ||||||||| |||||||| Sbjct 7533 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTTTCTGACTACAA 7592 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || || | ||||| || Sbjct 7593 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 7640 >seq2409662 Length=152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || || || |||||| | ||||| ||| ||||||| | || ||||| Sbjct 143 AAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 84 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||| || || ||||||||||| || || |||| ||||| Sbjct 83 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCAC 24 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || ||| |||| || || Sbjct 23 CTGGTCCTTCGTCTGAGGGGTGG 1 >seq1559739 Length=125 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||||||||| || ||| | ||||| ||| |||| || | || || ||| Sbjct 104 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCAGGGAAA 45 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 |||||||| || | ||||||||| |||||||||||||| || Sbjct 44 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 1 >seq136426 Length=23094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 11/231 (5%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||| | || || | || || || ||||||||| | || || ||| ||| Sbjct 21078 ATGCAGATCTTCATGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 21137 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC---GA 38359 |||| | | | || || || | || |||| ||||||| | ||| | || Sbjct 21138 GACATCATCGAGAATGCC-AAGGCCAAGATCC------AAGAGGGCACCCCCCACCCGGA 21190 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| || | || | || || ||||||||||| || | || |||||| ||||| Sbjct 21191 CCAGCAGAGGTTGATCTTTGCAGGGAAACAGCTGGAAGATGGGCACACCCTGTCTGACTA 21250 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || || | || ||||| ||||| ||||| ||||| || || Sbjct 21251 CAACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 21301 >seq46653 Length=63443 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| | || || || || || | ||| || ||||||||| || ||| || ||| Sbjct 30040 ATGCAGGTCTTTGTGAAGACCCTGAAGGGAAAGACCATCACCCCTGAGGTCAAGCCCAGT 29981 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | |||| ||||||| || | || || || |||||| ||||| Sbjct 29980 GACACCATTGAGAATGTCAAAGTCAAAATCCAAGATCAGGAAGGCAT-CCCGCCTGACCA 29922 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGC---GCACCCTCAACGACTA 38419 |||| || ||| || ||||||||||||| || | || || | |||| |||| Sbjct 29921 GCAGCATCTAGTTTTTGCCAGCAAACAGCTGGAGGATGGGCCGTGCTCTGTCAA--ACTA 29864 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| ||||| || || || |||||||||||||| ||| || || ||||| Sbjct 29863 CAAAATCCAGAA-GAGTTCACCCTGCATTTGGTGCTTCGTCTGTGAAGCGGC 29813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480862935066240