Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq66256 118 1e-21
seq141641 116 4e-21
seq300236 114 1e-20
seq2409662 87.8 2e-12
seq1559739 84.2 2e-11
seq136426 84.2 2e-11
seq46653 84.2 2e-11
>seq66256
Length=6617
Score = 118 bits (130), Expect = 1e-21
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| ||
Sbjct 1414 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCC 1473
Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| |||| | | | |||| | || | || |||| || || || || |||||| | ||
Sbjct 1474 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 1532
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||| ||||||| | || |||| |||||||| || | ||||| || || ||
Sbjct 1533 CCAGCAGAGGCTCATCTTTGCCAGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 1592
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||||||| || || ||| ||||| |||| || | | |||| || |||
Sbjct 1593 CAACATCCAGAAAGAGTAGACCCTGCACCTGGTCCTTCATCTGAGGGGTGGC 1644
>seq141641
Length=332
Score = 116 bits (128), Expect = 4e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 133280 CCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGA 133339
||| |||||| || || ||||| || || || || || || |||||||| || || |
Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273
Query 133340 AATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCT 133399
||| | ||| | |||| | ||||||| | |||||||||| ||||||||||
Sbjct 272 AATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCT 213
Query 133400 CCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATT 133459
|||| | |||||||| || ||||| ||||| || ||||| ||| || || ||||
Sbjct 212 CCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATT 153
Query 133460 GTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493
|| ||||| || ||||| |||||||| |||||
Sbjct 152 TAATAGGAAAGATGACAAAGCGGCGGGGATTTTC 119
>seq300236
Length=7644
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || ||||| || ||||| || ||||||||||| | || || ||| |||
Sbjct 7413 AATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAG 7472
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | | || | || || | || |||||||| || || | |||||
Sbjct 7473 TGACACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAGGGCATCCCTCCAGACCA 7532
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | ||||| ||||||||||| || | ||||||||| ||||||||
Sbjct 7533 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTTTCTGACTACAA 7592
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| || || | || ||||| |||| || || | ||||| ||
Sbjct 7593 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 7640
>seq2409662
Length=152
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| || || || || |||||| | ||||| ||| ||||||| | || |||||
Sbjct 143 AAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 84
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|||||||| || | ||||| || || ||||||||||| || || |||| |||||
Sbjct 83 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCAC 24
Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470
|||| || ||| |||| || ||
Sbjct 23 CTGGTCCTTCGTCTGAGGGGTGG 1
>seq1559739
Length=125
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||||||||| || ||| | ||||| ||| |||| || | || || |||
Sbjct 104 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCAGGGAAA 45
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|||||||| || | ||||||||| |||||||||||||| ||
Sbjct 44 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 1
>seq136426
Length=23094
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/231 (69%), Gaps = 11/231 (5%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||| | || || | || || || ||||||||| | || || ||| |||
Sbjct 21078 ATGCAGATCTTCATGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 21137
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC---GA 38359
|||| | | | || || || | || |||| ||||||| | ||| | ||
Sbjct 21138 GACATCATCGAGAATGCC-AAGGCCAAGATCC------AAGAGGGCACCCCCCACCCGGA 21190
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||| || | || | || || ||||||||||| || | || |||||| |||||
Sbjct 21191 CCAGCAGAGGTTGATCTTTGCAGGGAAACAGCTGGAAGATGGGCACACCCTGTCTGACTA 21250
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||| || || | || ||||| ||||| ||||| ||||| || ||
Sbjct 21251 CAACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 21301
>seq46653
Length=63443
Score = 84.2 bits (92), Expect = 2e-11
Identities = 161/232 (69%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| | || || || || || | ||| || ||||||||| || ||| || |||
Sbjct 30040 ATGCAGGTCTTTGTGAAGACCCTGAAGGGAAAGACCATCACCCCTGAGGTCAAGCCCAGT 29981
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362
|||| | | | | | |||| ||||||| || | || || || |||||| |||||
Sbjct 29980 GACACCATTGAGAATGTCAAAGTCAAAATCCAAGATCAGGAAGGCAT-CCCGCCTGACCA 29922
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGC---GCACCCTCAACGACTA 38419
|||| || ||| || ||||||||||||| || | || || | |||| ||||
Sbjct 29921 GCAGCATCTAGTTTTTGCCAGCAAACAGCTGGAGGATGGGCCGTGCTCTGTCAA--ACTA 29864
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||| ||||| || || || |||||||||||||| ||| || || |||||
Sbjct 29863 CAAAATCCAGAA-GAGTTCACCCTGCATTTGGTGCTTCGTCTGTGAAGCGGC 29813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 480862935066240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |