Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq2955700 89.7 2e-13 seq2815131 86.0 2e-12 >seq2955700 Length=463 Score = 89.7 bits (98), Expect = 2e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 53372 GCGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATCCCGACC 53431 ||| ||||||| |||| ||| | || ||||| | |||||| || ||||| || Sbjct 407 GCGGTGATGCCGGATGTGCACCTGGGCAAGGGTTCGACCATCGGCAGCGTAATCCCCACG 348 Query 53432 GAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGCTGCGGCATGATCGCAGCC 53491 | |||||| | ||||||||||| || ||||| || || |||||||| ||||| || || Sbjct 347 GTGGGCGCGATTATCCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGGATGATTGCCGCG 288 Query 53492 CGCACCACG 53500 ||||||||| Sbjct 287 CGCACCACG 279 >seq2815131 Length=243 Score = 86.0 bits (94), Expect = 2e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 53705 ACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACCGCGTGTGG 53764 |||||||| |||||| |||||| ||||| | ||||| ||||| | ||||||||| Sbjct 1 ACGCTGGGTACCGGCAACCACTTCGTCGAGGTCTGCCTGGACCAGGAGCAGCGCGTGTGG 60 Query 53765 TTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAA 53799 || | ||||||||||||||||||||||| || || Sbjct 61 TTCATGCTGCACTCCGGTTCGCGTGGCGTAGGCAA 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183601834823920