Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq185925 105 3e-17 seq155098 105 3e-17 seq381307 96.9 1e-14 seq144077 91.5 6e-13 seq27132 89.7 2e-12 seq319519 87.8 7e-12 seq2709013 86.0 2e-11 >seq185925 Length=7279 Score = 105 bits (116), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | || || ||||| || || || || |||||||| || ||| | | Sbjct 516 ATGCAGATTTTCATGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTTG 457 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 456 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 397 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || | | || || ||||| ||||||||| |||||| | || || || Sbjct 396 CAAAGACAGATCTGTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAAC 337 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 336 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 299 >seq155098 Length=7669 Score = 105 bits (116), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || ||||| || || || || ||||| || || ||| | || Sbjct 7437 ATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 7378 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 7377 GATACAATAGAAAATGTAAAGACCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 7318 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || | || || ||||| ||||||| | | |||||| | || || | Sbjct 7317 CAAATACTGATCTTTGCTGGCAAGCAACTGGAAGATGAACGTACTTTGTCTGACTACAGC 7258 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 7257 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 7220 >seq381307 Length=16690 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 7153 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 7212 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| | ||||| | | || || ||||| || Sbjct 7213 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 7265 >seq144077 Length=3072 Score = 91.5 bits (100), Expect = 6e-13 Identities = 153/218 (70%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 96047 TATGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA- 96105 |||||||||| |||||||||||| || || || |||| ||| || | || | || Sbjct 2651 TATGCAATTTCTGGCACTAGGGGGTCATCTGGGTTTGAATCA--CATAGCAGTGAACAAA 2594 Query 96106 -GGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTA 96164 ||||||||| |||||| ||| |||| || || ||| | ||||| |||||| | Sbjct 2593 TGGATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCATTGTGATTTTAGAATATCAA 2534 Query 96165 AACAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTT 96224 |||||| || || | ||| ||||||||||||||| ||| ||||| || | Sbjct 2533 GACAAATGCTGCCATTACTT-TAACATTTGGATGATAAATTCTTGTTATAAATGCAACCT 2475 Query 96225 TAGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262 |||| || || | || |||||| ||||||| |||| Sbjct 2474 TAGGTGGTTTGAAAGGGTAGTCTGAAGGAAAATGAATT 2437 >seq27132 Length=78522 Score = 89.7 bits (98), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 96048 ATGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA-- 96105 ||||||| | |||||||||||| || || || ||||| ||| || | | || | || Sbjct 74312 ATGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAACAGTGAACAAAT 74255 Query 96106 GGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAA 96165 ||||||||| |||||| ||| ||| || || ||| | | ||| | |||| | Sbjct 74254 GGATAAAAGAACTTTAGAAATAGATAAAGCAGGAGACCACTGTGATCTTAGACTATCAAG 74195 Query 96166 ACAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTT 96225 |||||| ||| || | |||||||||||| |||||| ||| ||||| || | Sbjct 74194 ACAAATGCTGCCTTTACTGTTAATATTTGGATAATAAATTCTTGTTGTAAATGCAACCTG 74135 Query 96226 AGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262 ||| || || |||| |||||| ||||||| |||| Sbjct 74134 AGGTGGTTTGAATGGGTAGTCTGAAGGAAAATGAATT 74098 >seq319519 Length=18676 Score = 87.8 bits (96), Expect = 7e-12 Identities = 155/220 (70%), Gaps = 12/220 (5%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| || || | || | || | Sbjct 27 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGACCA--CATAGCAGTGAACAAATG 84 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCA--GTTATTTTTTAAAATATCTA 96164 |||||||| |||||| ||| |||| || || ||| || || || | |||||| | Sbjct 85 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACCGTGATCTT--AGAATATCGA 142 Query 96165 AACAAAT--TGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAAT 96222 |||||| |||| | || ||||||||||||||||||| ||| ||||| || Sbjct 143 GACAAATGCTGCAATTACTGT--TAATATTTGGATGATAAATTCTTGTTGTAAATGCAAC 200 Query 96223 TTTAGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262 ||||| || || | || |||||| ||||||| ||||| Sbjct 201 CTTAGGTGGTTTGAAGGGGTAGTCTGTAGGAAAATTAATT 240 >seq2709013 Length=200 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 391083 ACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAA 391142 || || ||||| || ||||| | || |||| || ||| | | || || || || Sbjct 198 ACCATCACTCTCGAGCTTGAACCCTCAGATACAATAGAAAATGTAAAGGCCAAGATCCAG 139 Query 391143 GATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAA 391202 | ||||||||||||||||||||| || ||| | | || | | || || ||||| ||| Sbjct 138 GGTAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCATTGCTGGCAAGCAACTGGAA 79 Query 391203 GATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 |||||| | |||||| | || || || ||| | ||||| | | ||||| |||| || Sbjct 78 GATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCCCTCTTCATCTAGTGTTG 19 Query 391263 AGACT 391267 ||||| Sbjct 18 AGACT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1897536166105188