Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq185925 105 3e-17
seq155098 105 3e-17
seq381307 96.9 1e-14
seq144077 91.5 6e-13
seq27132 89.7 2e-12
seq319519 87.8 7e-12
seq2709013 86.0 2e-11
>seq185925
Length=7279
Score = 105 bits (116), Expect = 3e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||| | || || ||||| || || || || |||||||| || ||| | |
Sbjct 516 ATGCAGATTTTCATGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTTG 457
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | || || || || ||||||||||||||||||||||| ||
Sbjct 456 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 397
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | || | | || || ||||| ||||||||| |||||| | || || ||
Sbjct 396 CAAAGACAGATCTGTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAAC 337
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| |||| || |||||
Sbjct 336 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 299
>seq155098
Length=7669
Score = 105 bits (116), Expect = 3e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || || || ||||| || || || || ||||| || || ||| | ||
Sbjct 7437 ATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 7378
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | || || || || ||||||||||||||||||||||| ||
Sbjct 7377 GATACAATAGAAAATGTAAAGACCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 7318
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | || || | || || ||||| ||||||| | | |||||| | || || |
Sbjct 7317 CAAATACTGATCTTTGCTGGCAAGCAACTGGAAGATGAACGTACTTTGTCTGACTACAGC 7258
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| |||| || |||||
Sbjct 7257 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 7220
>seq381307
Length=16690
Score = 96.9 bits (106), Expect = 1e-14
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|||||| ||||||| ||||||| || || |||||||||||||| ||||| || |||||
Sbjct 7153 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 7212
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
|||||||| ||| ||||||||| | ||||| | | || || ||||| ||
Sbjct 7213 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 7265
>seq144077
Length=3072
Score = 91.5 bits (100), Expect = 6e-13
Identities = 153/218 (70%), Gaps = 5/218 (2%)
Strand=Plus/Minus
Query 96047 TATGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA- 96105
|||||||||| |||||||||||| || || || |||| ||| || | || | ||
Sbjct 2651 TATGCAATTTCTGGCACTAGGGGGTCATCTGGGTTTGAATCA--CATAGCAGTGAACAAA 2594
Query 96106 -GGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTA 96164
||||||||| |||||| ||| |||| || || ||| | ||||| |||||| |
Sbjct 2593 TGGATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCATTGTGATTTTAGAATATCAA 2534
Query 96165 AACAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTT 96224
|||||| || || | ||| ||||||||||||||| ||| ||||| || |
Sbjct 2533 GACAAATGCTGCCATTACTT-TAACATTTGGATGATAAATTCTTGTTATAAATGCAACCT 2475
Query 96225 TAGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262
|||| || || | || |||||| ||||||| ||||
Sbjct 2474 TAGGTGGTTTGAAAGGGTAGTCTGAAGGAAAATGAATT 2437
>seq27132
Length=78522
Score = 89.7 bits (98), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 96048 ATGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA-- 96105
||||||| | |||||||||||| || || || ||||| ||| || | | || | ||
Sbjct 74312 ATGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAACAGTGAACAAAT 74255
Query 96106 GGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAA 96165
||||||||| |||||| ||| ||| || || ||| | | ||| | |||| |
Sbjct 74254 GGATAAAAGAACTTTAGAAATAGATAAAGCAGGAGACCACTGTGATCTTAGACTATCAAG 74195
Query 96166 ACAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTT 96225
|||||| ||| || | |||||||||||| |||||| ||| ||||| || |
Sbjct 74194 ACAAATGCTGCCTTTACTGTTAATATTTGGATAATAAATTCTTGTTGTAAATGCAACCTG 74135
Query 96226 AGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262
||| || || |||| |||||| ||||||| ||||
Sbjct 74134 AGGTGGTTTGAATGGGTAGTCTGAAGGAAAATGAATT 74098
>seq319519
Length=18676
Score = 87.8 bits (96), Expect = 7e-12
Identities = 155/220 (70%), Gaps = 12/220 (5%)
Strand=Plus/Plus
Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106
|||||| | |||||||||||| || || || ||||| || || | || | || |
Sbjct 27 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGACCA--CATAGCAGTGAACAAATG 84
Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCA--GTTATTTTTTAAAATATCTA 96164
|||||||| |||||| ||| |||| || || ||| || || || | |||||| |
Sbjct 85 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACCGTGATCTT--AGAATATCGA 142
Query 96165 AACAAAT--TGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAAT 96222
|||||| |||| | || ||||||||||||||||||| ||| ||||| ||
Sbjct 143 GACAAATGCTGCAATTACTGT--TAATATTTGGATGATAAATTCTTGTTGTAAATGCAAC 200
Query 96223 TTTAGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262
||||| || || | || |||||| ||||||| |||||
Sbjct 201 CTTAGGTGGTTTGAAGGGGTAGTCTGTAGGAAAATTAATT 240
>seq2709013
Length=200
Score = 86.0 bits (94), Expect = 2e-11
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 391083 ACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAA 391142
|| || ||||| || ||||| | || |||| || ||| | | || || || ||
Sbjct 198 ACCATCACTCTCGAGCTTGAACCCTCAGATACAATAGAAAATGTAAAGGCCAAGATCCAG 139
Query 391143 GATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAA 391202
| ||||||||||||||||||||| || ||| | | || | | || || ||||| |||
Sbjct 138 GGTAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCATTGCTGGCAAGCAACTGGAA 79
Query 391203 GATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTA 391262
|||||| | |||||| | || || || ||| | ||||| | | ||||| |||| ||
Sbjct 78 GATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCCCTCTTCATCTAGTGTTG 19
Query 391263 AGACT 391267
|||||
Sbjct 18 AGACT 14
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1897536166105188
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |