Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq313959 168 5e-36 seq47025 132 3e-25 seq357474 100 2e-15 seq110407 100 2e-15 >seq313959 Length=22831 Score = 168 bits (186), Expect = 5e-36 Identities = 926/1461 (63%), Gaps = 30/1461 (2%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||| ||||| ||||| || |||| ||| || || || || || ||||| || Sbjct 3068 ATTGGTAATGGTAATCTTGTTGGCCTTGCCCGTGCTCTTGTCCATAGCTGTTACATTGAG 3009 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 ||||||||||||||| | ||||| || || ||||| || || || || || | || || Sbjct 3008 AATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGGGGCACTCCCCTGGGTGCCGG 2949 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 ||||| || || || ||| ||||| || || || ||| | | || Sbjct 2948 AGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGAGTCATGGCCCTCTC 2889 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 ||||| | | ||||| || | | ||||| ||||| || || || || | ||| Sbjct 2888 GCCCTCATAGACCTGGATCAGCACGCCCGGCTGATTGTCTGAGTAGGTGGTGAAAA-TCT 2830 Query 517453 GGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 | | | | | || || || | ||| | | || | ||||| | || |||| Sbjct 2829 GTGTCTGCTTCGTGGGGATGGTGGAGTTGCGCTTGATCAGTACAGTCATGACTCCCCCTG 2770 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 | || || ||||| | ||| || |||| ||||| | | | | | || | |||| Sbjct 2769 CGGTCTCCAAACCTAAAGACAGGGGAGCCACATCCAACAAAAGCAGGTCCTGTACCTTTT 2710 Query 517572 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 517631 || | | || | | ||| ||||| |||| ||||| ||||| ||||| || |||| Sbjct 2709 CAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCAT 2650 Query 517632 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTT 517690 | || || | | | || || | |||||| || | | || || | | ||| Sbjct 2649 CGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAACA----GCCTT 2594 Query 517691 ---ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 517747 |||||||| || |||| || || || ||||| ||||| ||||| | | | |||| Sbjct 2593 TGAACCTTAGGGATTCGAGTAGAGCCCCCTACTAAGACAATGTCATGGATTTTAGCTTTA 2534 Query 517748 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCT 517807 |||| || | |||| | | | ||||| || || || || | ||||||| |||| Sbjct 2533 TCCATCTTGGCATCCCGAAGAGCCTTTTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCT 2474 Query 517808 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGA 517865 | ||| | ||||| || ||||| || || || | || || ||||| ||||| Sbjct 2473 GCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCAT 2416 Query 517866 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 517925 | | ||||||| ||| | | | || || ||| || || | | || || | | Sbjct 2415 AAAGTGAATCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCTCTTGGCCCTCT 2356 Query 517926 CACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTA 517981 | || || || | | | | | || |||| | ||| |||| || | ||| Sbjct 2355 CGCAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTA 2300 Query 517982 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 518041 | ||| |||||||| ||||| ||| | | ||||| | || |||||||| || || Sbjct 2299 TGTTTCCTCTTGAATTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCTCCA 2240 Query 518042 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAA 518101 ||||| | || | || | || || | || | |||| ||||| || | | || Sbjct 2239 CCCAAGTGGGTGTCCCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGG 2180 Query 518102 AGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGT 518159 | | |||||| || || ||||||| |||||| || | |||| || | || || Sbjct 2179 ACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGCTCTCCCTGA 2120 Query 518160 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219 | || ||| | | ||| ||||| |||| ||||||||||| |||||||| |||||||| | Sbjct 2119 CCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTTA 2062 Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279 ||||| ||||| || || |||||||| || ||||| || | || || || || | Sbjct 2061 GCACATTGAGACCTGCGATAACACCTGCATCCTTGGTGGCCTGACGCTGAGAGTCATTGA 2002 Query 518280 AATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCG 518339 | || || || ||||| || || |||| ||| || | || | | |||| || | Sbjct 2001 AGTAAGCTGGCACAGTGATCACAGCATTAGTGACAGTGTAGCCCAAAAAAGCCTCAGCAG 1942 Query 518340 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATT 518399 | | ||||| ||| | | | ||| || || |||| || || || | |||| || Sbjct 1941 TCTCCTTCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTT 1883 Query 518400 --CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGG 518457 | |||| || || || | | || || || | || || |||| || || Sbjct 1882 TCCCCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATTACTTGGAAAGG 1824 Query 518458 CCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTT 518517 ||| ||||||||||||||| || | |||||||| | ||| || || | ||||| Sbjct 1823 CCAAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGCCGATCAGACGTTT 1764 Query 518518 TGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAAT 518577 |||||||| | ||| || ||||| || || | || | ||||| ||||| || || Sbjct 1763 GGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGAT 1704 Query 518578 CAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATT 518637 || | || || || || || | || || || || ||||| || || || | || Sbjct 1703 GAGCCGCTCGGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGGCGTT 1644 Query 518638 CGCAATAATTTCAACTTTACC 518658 || || || || || || || Sbjct 1643 GGCGATGATCTCCACCTTGCC 1623 >seq47025 Length=35021 Score = 132 bits (146), Expect = 3e-25 Identities = 354/526 (67%), Gaps = 14/526 (3%) Strand=Plus/Plus Query 517242 TTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGA 517301 ||||| ||||| | |||| || || ||||| ||||||||||| | |||||| |||| Sbjct 8760 TTGTTCTCTTATCCACAGCAGAGAC-TTGAGAATGCCATTGGCATCAATATCAAAAGTGA 8818 Query 517302 CTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCA 517361 |||| || ||||| || || | | ||||| || || ||| | | ||| || ||| Sbjct 8819 CTTCCATCTGAGGAACACCACAGGGGGCAGGAGGTATGCCTGTGAGTTCAAAC-TTGCCA 8877 Query 517362 GATTA-TTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTAC 517419 | | |||||||| || || |||| ||||| | ||| || || |||| | | Sbjct 8878 GGCAAGTTATTATCGTTGGTCCTGGTTCGCTCACCTACATAAACCTGAATGAGTA-CACC 8936 Query 517420 AGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGT 517478 || || || || || || | || || | |||| | || || |||||| || | | Sbjct 8937 AGGCTGGTTGTCAGAGTAGCTGGTGAA-AGTCTGCGTCTTCTTTGTAGGAATGGTGGCAT 8995 Query 517479 TTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAG 517538 | | | | | ||||| | ||||| || ||||| | ||||| |||||||||| Sbjct 8996 TGTGCTTGAGGACA---GTCATGACTCCACCAGCAGTTTCAATTCCAAGGGAAAGAGGAG 9052 Query 517539 TGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCT 517597 ||||||| | || | | | ||||| |||||| | | ||| |||| ||| ||| Sbjct 9053 TGACATCTAACAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGACAA-AATGGCT 9111 Query 517598 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 517657 | || ||||| ||||||||||||| ||| ||| | || || | | | ||||| || | Sbjct 9112 ACCTGCATAGCTGCACCATATGCAAGAGCCTCACCGGGGTTGATGCTCTTATTTAATTAT 9171 Query 517658 TTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCC 517716 || |||||||| || | ||||||| ||| | ||| || || | | ||| || || Sbjct 9172 TTCCCATTGAAGAAGTCCTGGAGAAGTT-TCTCAATCTTGGGGATGTGGGTTGAGCCACC 9230 Query 517717 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCC 517762 || || ||||| ||||| | ||| || || ||||| || | |||| Sbjct 9231 CACCAAGACAATATCATGGATCTGAGACTTGTCCAGCTTGGCATCC 9276 >seq357474 Length=26394 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| || || Sbjct 17194 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGCAGTACG 17135 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 17134 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAGTAG 17075 Query 518285 GCAGGAACAGTAATAACGGC 518304 ||||| || || | ||| || Sbjct 17074 GCAGGTACTGTGACAACAGC 17055 >seq110407 Length=16138 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| | Sbjct 12876 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 12935 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | ||||| |||||||| |||||||| ||| | | |||||| | Sbjct 12936 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGGAAAATACTCAATGTTCGA 12995 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 12996 GAAGCTTCTCATAAA 13010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3627560310624766