Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq313959 168 5e-36
seq47025 132 3e-25
seq357474 100 2e-15
seq110407 100 2e-15
>seq313959
Length=22831
Score = 168 bits (186), Expect = 5e-36
Identities = 926/1461 (63%), Gaps = 30/1461 (2%)
Strand=Plus/Minus
Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 517272
||| ||||| ||||| || |||| ||| || || || || || ||||| ||
Sbjct 3068 ATTGGTAATGGTAATCTTGTTGGCCTTGCCCGTGCTCTTGTCCATAGCTGTTACATTGAG 3009
Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332
||||||||||||||| | ||||| || || ||||| || || || || || | || ||
Sbjct 3008 AATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGGGGCACTCCCCTGGGTGCCGG 2949
Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392
||||| || || || ||| ||||| || || || ||| | | ||
Sbjct 2948 AGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGAGTCATGGCCCTCTC 2889
Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452
||||| | | ||||| || | | ||||| ||||| || || || || | |||
Sbjct 2888 GCCCTCATAGACCTGGATCAGCACGCCCGGCTGATTGTCTGAGTAGGTGGTGAAAA-TCT 2830
Query 517453 GGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511
| | | | | || || || | ||| | | || | ||||| | || ||||
Sbjct 2829 GTGTCTGCTTCGTGGGGATGGTGGAGTTGCGCTTGATCAGTACAGTCATGACTCCCCCTG 2770
Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571
| || || ||||| | ||| || |||| ||||| | | | | | || | ||||
Sbjct 2769 CGGTCTCCAAACCTAAAGACAGGGGAGCCACATCCAACAAAAGCAGGTCCTGTACCTTTT 2710
Query 517572 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 517631
|| | | || | | ||| ||||| |||| ||||| ||||| ||||| || ||||
Sbjct 2709 CAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCAT 2650
Query 517632 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTT 517690
| || || | | | || || | |||||| || | | || || | | |||
Sbjct 2649 CGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAACA----GCCTT 2594
Query 517691 ---ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 517747
|||||||| || |||| || || || ||||| ||||| ||||| | | | ||||
Sbjct 2593 TGAACCTTAGGGATTCGAGTAGAGCCCCCTACTAAGACAATGTCATGGATTTTAGCTTTA 2534
Query 517748 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCT 517807
|||| || | |||| | | | ||||| || || || || | ||||||| ||||
Sbjct 2533 TCCATCTTGGCATCCCGAAGAGCCTTTTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCT 2474
Query 517808 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGA 517865
| ||| | ||||| || ||||| || || || | || || ||||| |||||
Sbjct 2473 GCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCAT 2416
Query 517866 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 517925
| | ||||||| ||| | | | || || ||| || || | | || || | |
Sbjct 2415 AAAGTGAATCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCTCTTGGCCCTCT 2356
Query 517926 CACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTA 517981
| || || || | | | | | || |||| | ||| |||| || | |||
Sbjct 2355 CGCAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTA 2300
Query 517982 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 518041
| ||| |||||||| ||||| ||| | | ||||| | || |||||||| || ||
Sbjct 2299 TGTTTCCTCTTGAATTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCTCCA 2240
Query 518042 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAA 518101
||||| | || | || | || || | || | |||| ||||| || | | ||
Sbjct 2239 CCCAAGTGGGTGTCCCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGG 2180
Query 518102 AGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGT 518159
| | |||||| || || ||||||| |||||| || | |||| || | || ||
Sbjct 2179 ACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGCTCTCCCTGA 2120
Query 518160 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219
| || ||| | | ||| ||||| |||| ||||||||||| |||||||| |||||||| |
Sbjct 2119 CCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTTA 2062
Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279
||||| ||||| || || |||||||| || ||||| || | || || || || |
Sbjct 2061 GCACATTGAGACCTGCGATAACACCTGCATCCTTGGTGGCCTGACGCTGAGAGTCATTGA 2002
Query 518280 AATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCG 518339
| || || || ||||| || || |||| ||| || | || | | |||| || |
Sbjct 2001 AGTAAGCTGGCACAGTGATCACAGCATTAGTGACAGTGTAGCCCAAAAAAGCCTCAGCAG 1942
Query 518340 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATT 518399
| | ||||| ||| | | | ||| || || |||| || || || | |||| ||
Sbjct 1941 TCTCCTTCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTT 1883
Query 518400 --CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGG 518457
| |||| || || || | | || || || | || || |||| || ||
Sbjct 1882 TCCCCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATTACTTGGAAAGG 1824
Query 518458 CCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTT 518517
||| ||||||||||||||| || | |||||||| | ||| || || | |||||
Sbjct 1823 CCAAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGCCGATCAGACGTTT 1764
Query 518518 TGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAAT 518577
|||||||| | ||| || ||||| || || | || | ||||| ||||| || ||
Sbjct 1763 GGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGAT 1704
Query 518578 CAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATT 518637
|| | || || || || || | || || || || ||||| || || || | ||
Sbjct 1703 GAGCCGCTCGGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGGCGTT 1644
Query 518638 CGCAATAATTTCAACTTTACC 518658
|| || || || || || ||
Sbjct 1643 GGCGATGATCTCCACCTTGCC 1623
>seq47025
Length=35021
Score = 132 bits (146), Expect = 3e-25
Identities = 354/526 (67%), Gaps = 14/526 (3%)
Strand=Plus/Plus
Query 517242 TTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGA 517301
||||| ||||| | |||| || || ||||| ||||||||||| | |||||| ||||
Sbjct 8760 TTGTTCTCTTATCCACAGCAGAGAC-TTGAGAATGCCATTGGCATCAATATCAAAAGTGA 8818
Query 517302 CTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCA 517361
|||| || ||||| || || | | ||||| || || ||| | | ||| || |||
Sbjct 8819 CTTCCATCTGAGGAACACCACAGGGGGCAGGAGGTATGCCTGTGAGTTCAAAC-TTGCCA 8877
Query 517362 GATTA-TTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTAC 517419
| | |||||||| || || |||| ||||| | ||| || || |||| | |
Sbjct 8878 GGCAAGTTATTATCGTTGGTCCTGGTTCGCTCACCTACATAAACCTGAATGAGTA-CACC 8936
Query 517420 AGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGT 517478
|| || || || || || | || || | |||| | || || |||||| || | |
Sbjct 8937 AGGCTGGTTGTCAGAGTAGCTGGTGAA-AGTCTGCGTCTTCTTTGTAGGAATGGTGGCAT 8995
Query 517479 TTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAG 517538
| | | | | ||||| | ||||| || ||||| | ||||| ||||||||||
Sbjct 8996 TGTGCTTGAGGACA---GTCATGACTCCACCAGCAGTTTCAATTCCAAGGGAAAGAGGAG 9052
Query 517539 TGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCT 517597
||||||| | || | | | ||||| |||||| | | ||| |||| ||| |||
Sbjct 9053 TGACATCTAACAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGACAA-AATGGCT 9111
Query 517598 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 517657
| || ||||| ||||||||||||| ||| ||| | || || | | | ||||| || |
Sbjct 9112 ACCTGCATAGCTGCACCATATGCAAGAGCCTCACCGGGGTTGATGCTCTTATTTAATTAT 9171
Query 517658 TTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCC 517716
|| |||||||| || | ||||||| ||| | ||| || || | | ||| || ||
Sbjct 9172 TTCCCATTGAAGAAGTCCTGGAGAAGTT-TCTCAATCTTGGGGATGTGGGTTGAGCCACC 9230
Query 517717 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCC 517762
|| || ||||| ||||| | ||| || || ||||| || | ||||
Sbjct 9231 CACCAAGACAATATCATGGATCTGAGACTTGTCCAGCTTGGCATCC 9276
>seq357474
Length=26394
Score = 100 bits (110), Expect = 2e-15
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || | ||||| |||| ||||||||||||||| ||||| || |||| || ||
Sbjct 17194 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGCAGTACG 17135
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| ||||||||||| |||| |||||||| || || || | || || || || || ||
Sbjct 17134 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAGTAG 17075
Query 518285 GCAGGAACAGTAATAACGGC 518304
||||| || || | ||| ||
Sbjct 17074 GCAGGTACTGTGACAACAGC 17055
>seq110407
Length=16138
Score = 100 bits (110), Expect = 2e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500
||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| |
Sbjct 12876 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 12935
Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560
|| |||| ||||| | ||||| |||||||| |||||||| ||| | | |||||| |
Sbjct 12936 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGGAAAATACTCAATGTTCGA 12995
Query 635561 GATGCTAGTCCTAAA 635575
|| ||| || ||||
Sbjct 12996 GAAGCTTCTCATAAA 13010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3627560310624766
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |