Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_014660.1 Length=167716 Score E Sequences producing significant alignments: (Bits) Value seq610375 86.0 6e-12 seq2907691 82.4 8e-11 seq391464 82.4 8e-11 >seq610375 Length=104 Score = 86.0 bits (94), Expect = 6e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 80425 GGACTCGAACCAGTGACCATCCACTTAGAAGGCGGATGCTCTATCCATCTGAGCTAC 80481 ||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||| Sbjct 65 GGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTAC 9 >seq2907691 Length=344 Score = 82.4 bits (90), Expect = 8e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 80427 ACTCGAACCAGTGACCATCCACTTAGAAGGCGGATGCTCTATCCATCTGAGCTAC 80481 ||||||||| | |||||||| |||||||||||||||||||||||| ||||||||| Sbjct 344 ACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTAC 290 >seq391464 Length=100 Score = 82.4 bits (90), Expect = 8e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 80427 ACTCGAACCAGTGACCATCCACTTAGAAGGCGGATGCTCTATCCATCTGAGCTAC 80481 ||||||||| | |||||||| |||||||||||||||||||||||| ||||||||| Sbjct 100 ACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTAC 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515848433182560