Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3058874 104 3e-17 seq197607 100 3e-16 >seq3058874 Length=1308 Score = 104 bits (114), Expect = 3e-17 Identities = 252/373 (68%), Gaps = 14/373 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| || || ||||| || || | || || || |||||| Sbjct 460 CGGTCAAAACGGCCTGGACGCAGCAGCGCAGGGTCCAGTACGTCCGGACGGTTGGTTGCG 519 Query 15945 GCGATGACAACAATACC-TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 |||||||| | || || | ||| | || ||||| |||||||| || | |||||| Sbjct 520 GCGATGACGATGATGCCGTCATTCATC-TCGAAACCGTCCATCTCCACCAGTAACTGGTT 578 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCC 16061 | || ||||| || || |||| | || ||| || || | || || ||| Sbjct 579 GAGGGTCTGTTCACGCTCGTCATGACC--GCCACCCATGCCGGCGCCACGATGGCGACCC 636 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGACTTCA 16118 |||||||| || || |||||||||| ||||||||| || || | | || ||| Sbjct 637 ACGGCATCGATTTCGTCAATGAAGATGATGCATGGCGCGTGCTTCTTG---GCCTGTTCG 693 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || | ||| || ||||| |||| || ||||| || |||||||| ||||||| | || Sbjct 694 AACATATCGCGAACACGGCTGGCACCGACACCGACGAACATCTCGACAAAGTCAGAACCG 753 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 ||| || | | ||| || || || | ||| || ||||| || ||| || | || || Sbjct 754 GAA-ATGGTAAAGAACGGCACTTTGGCTTCGCCGGCAATCGCCTTGGCCAGCAAGGTTTT 812 Query 16238 ACCCGTACCTGGC 16250 ||| ||||| ||| Sbjct 813 ACCGGTACCCGGC 825 >seq197607 Length=1217 Score = 100 bits (110), Expect = 3e-16 Identities = 254/376 (68%), Gaps = 14/376 (4%) Strand=Plus/Minus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||| || || || ||||| || || | ||| ||||| | ||| || || || Sbjct 622 CTGACGGTCGAAACGGCCTGGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGT 563 Query 15941 TGCGGCGATGACAACAATACC-TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCT 15999 ||||||||||| | || || | ||| || || || || |||||||| || | | Sbjct 562 CGCGGCGATGACGATGATGCCGTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATT 504 Query 16000 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTT 16057 |||| | || || || || ||||||| | || ||| || || | ||| || Sbjct 503 GGTTGAGGGTCTGCTCGCGCTCATCATGACCAC-CAC-CCATGCCGGCGCCGCGATGGCG 446 Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGCGAC 16114 ||||||||||| || || || ||||||| |||||| ||| || || | | || Sbjct 445 ACCCACGGCATCGATTTCGTCGATGAAGATGATGCACGGTGCGTGCTTCTTG---GCCTG 389 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 ||| || | ||| || ||||| |||| |||||||| || ||||| || ||||||| | Sbjct 388 TTCGAACATATCGCGAACACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGA 329 Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 ||||| || | || ||| || || || | |||||| ||||| || ||| || | | Sbjct 328 ACCGGAA-ATGGTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGG 270 Query 16234 TCTTACCCGTACCTGG 16249 | ||||| ||||| || Sbjct 269 TTTTACCGGTACCCGG 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596777778367920