Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq3058874 104 3e-17
seq197607 100 3e-16
>seq3058874
Length=1308
Score = 104 bits (114), Expect = 3e-17
Identities = 252/373 (68%), Gaps = 14/373 (4%)
Strand=Plus/Plus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| ||||| || ||||| || || ||||| || || | || || || ||||||
Sbjct 460 CGGTCAAAACGGCCTGGACGCAGCAGCGCAGGGTCCAGTACGTCCGGACGGTTGGTTGCG 519
Query 15945 GCGATGACAACAATACC-TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003
|||||||| | || || | ||| | || ||||| |||||||| || | ||||||
Sbjct 520 GCGATGACGATGATGCCGTCATTCATC-TCGAAACCGTCCATCTCCACCAGTAACTGGTT 578
Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCC 16061
| || ||||| || || |||| | || ||| || || | || || |||
Sbjct 579 GAGGGTCTGTTCACGCTCGTCATGACC--GCCACCCATGCCGGCGCCACGATGGCGACCC 636
Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGACTTCA 16118
|||||||| || || |||||||||| ||||||||| || || | | || |||
Sbjct 637 ACGGCATCGATTTCGTCAATGAAGATGATGCATGGCGCGTGCTTCTTG---GCCTGTTCG 693
Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178
|| | ||| || ||||| |||| || ||||| || |||||||| ||||||| | ||
Sbjct 694 AACATATCGCGAACACGGCTGGCACCGACACCGACGAACATCTCGACAAAGTCAGAACCG 753
Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237
||| || | | ||| || || || | ||| || ||||| || ||| || | || ||
Sbjct 754 GAA-ATGGTAAAGAACGGCACTTTGGCTTCGCCGGCAATCGCCTTGGCCAGCAAGGTTTT 812
Query 16238 ACCCGTACCTGGC 16250
||| ||||| |||
Sbjct 813 ACCGGTACCCGGC 825
>seq197607
Length=1217
Score = 100 bits (110), Expect = 3e-16
Identities = 254/376 (68%), Gaps = 14/376 (4%)
Strand=Plus/Minus
Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940
|| ||| || || || ||||| || || | ||| ||||| | ||| || || ||
Sbjct 622 CTGACGGTCGAAACGGCCTGGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGT 563
Query 15941 TGCGGCGATGACAACAATACC-TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCT 15999
||||||||||| | || || | ||| || || || || |||||||| || | |
Sbjct 562 CGCGGCGATGACGATGATGCCGTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATT 504
Query 16000 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTT 16057
|||| | || || || || ||||||| | || ||| || || | ||| ||
Sbjct 503 GGTTGAGGGTCTGCTCGCGCTCATCATGACCAC-CAC-CCATGCCGGCGCCGCGATGGCG 446
Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGCGAC 16114
||||||||||| || || || ||||||| |||||| ||| || || | | ||
Sbjct 445 ACCCACGGCATCGATTTCGTCGATGAAGATGATGCACGGTGCGTGCTTCTTG---GCCTG 389
Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174
||| || | ||| || ||||| |||| |||||||| || ||||| || ||||||| |
Sbjct 388 TTCGAACATATCGCGAACACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGA 329
Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233
||||| || | || ||| || || || | |||||| ||||| || ||| || | |
Sbjct 328 ACCGGAA-ATGGTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGG 270
Query 16234 TCTTACCCGTACCTGG 16249
| ||||| ||||| ||
Sbjct 269 TTTTACCGGTACCCGG 254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596777778367920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |