Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq2976925 109 6e-19
seq3058874 96.9 4e-15
seq356191 96.9 4e-15
seq343629 93.3 5e-14
seq338450 93.3 5e-14
seq320552 93.3 5e-14
seq56076 93.3 5e-14
seq35099 93.3 5e-14
seq7313 93.3 5e-14
seq198618 89.7 6e-13
seq101679 89.7 6e-13
seq49630 89.7 6e-13
seq2739903 87.8 2e-12
seq285737 87.8 2e-12
seq2993441 86.0 7e-12
seq3064036 84.2 2e-11
seq2700823 84.2 2e-11
seq147647 84.2 2e-11
seq20229 82.4 9e-11
>seq2976925
Length=544
Score = 109 bits (120), Expect = 6e-19
Identities = 160/221 (72%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558
|| ||| || ||||||||||| || || || ||| || || | || |||||| ||
Sbjct 217 CTGACGGTCAAAACGACCTGGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTTAGT 158
Query 11559 AGCGGCAATGACTACAATGCCAGTC--TCATTGTCGAAACCGTCCATTTCTGTGAGAAGC 11616
|| |||||||| | ||||| ||| ||||| ||||| |||||||| || || | |
Sbjct 157 CGCAGCAATGACGATGATGCC-GTCATTCATT-TCGAAGCCGTCCATCTCCACCAGCAAC 100
Query 11617 TGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCT 11674
||||||| ||||||||||||||||||| || || ||| || || ||| |
Sbjct 99 TGGTTGAGGGTCTGTTCACGCTCATCGT--GACCGCCACCCATGCCAGCACCACGATGGC 42
Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGT 11715
||| |||||||| || ||||||||||| | ||| ||||||
Sbjct 41 GACCAACAGCGTCGATTTCATCGATGAAGATGATGCACGGT 1
>seq3058874
Length=1308
Score = 96.9 bits (106), Expect = 4e-15
Identities = 201/291 (69%), Gaps = 10/291 (3%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| || ||||| ||||| || || || ||| || || | || |||||| || |||
Sbjct 460 CGGTCAAAACGGCCTGGACGCAGCAGCGCAGGGTCCAGTACGTCCGGACGGTTGGTTGCG 519
Query 11563 GCAATGACTACAATGCCAGTC--TCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620
|| ||||| | ||||| ||| |||| |||||||||||||| || || | |||||
Sbjct 520 GCGATGACGATGATGCC-GTCATTCATC-TCGAAACCGTCCATCTCCACCAGTAACTGGT 577
Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCTTACC 11678
||| |||||||||||||| || | || || ||| || || ||| | |||
Sbjct 578 TGAGGGTCTGTTCACGCTCGTCAT--GACCGCCACCCATGCCGGCGCCACGATGGCGACC 635
Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT-GCCTGTTCGA 11737
|| || || || || || ||||| | ||| || || | || | | ||||||||||
Sbjct 636 CACGGCATCGATTTCGTCAATGAAGATGATGCATGG-CGCGTGCTTCTTGGCCTGTTCGA 694
Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788
| | || || ||||| | || || ||||| ||||||||||| || ||||
Sbjct 695 ACATATCGCGAACACGGCTGGCACCGACACCGACGAACATCTCGACAAAGT 745
>seq356191
Length=1159
Score = 96.9 bits (106), Expect = 4e-15
Identities = 161/224 (72%), Gaps = 14/224 (6%)
Strand=Plus/Plus
Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACA---CGGTT 11555
|| ||| || ||||||||||| || || || ||| || | ||| || || |||||
Sbjct 328 CTGACGGTCAAAACGACCTGGACGCAGCAGCGCAGGGTCCA--ATA-CGTCAGGGCGGTT 384
Query 11556 TGTAGCGGCAATGACTACAATGCCAGTC--TCATTGTCGAAACCGTCCATTTCTGTGAGA 11613
|| || |||||||| | ||||| ||| ||||| ||||| |||||||| || ||
Sbjct 385 AGTCGCAGCAATGACGATGATGCC-GTCATTCATT-TCGAAGCCGTCCATCTCAACTAGC 442
Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCT 11671
| |||||||| ||||| ||||||||||||| || || ||| || || ||| |
Sbjct 443 AACTGGTTGAGGGTCTGCTCACGCTCATCGT--GACCGCCGCCCATGCCAGCACCACGAT 500
Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGT 11715
||| |||||||| || ||||||||||| | ||| ||||||
Sbjct 501 GGCGACCAACAGCGTCGATTTCATCGATGAAGATGATGCACGGT 544
>seq343629
Length=7557
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 6246 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 6188
>seq338450
Length=2752
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 2049 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 2107
>seq320552
Length=16403
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 8768 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 8826
>seq56076
Length=18430
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 9986 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 10044
>seq35099
Length=28473
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 14259 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 14201
>seq7313
Length=16021
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 12257 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 12199
>seq198618
Length=28570
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||||||
Sbjct 18051 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCTCAGGTTCGATCCCCGT 18109
>seq101679
Length=1773
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 569 TAGCTCAGCTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 511
>seq49630
Length=15172
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||
Sbjct 14071 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCGAGGTCGCGGGTTCGATCCCCGT 14013
>seq2739903
Length=210
Score = 87.8 bits (96), Expect = 2e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 136724 GTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTTGGGAACA 136783
|||||||||||||||||||| |||||||||||||| ||||||||| |||||| || ||
Sbjct 210 GTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCA 151
Query 136784 GCTTTT 136789
||||||
Sbjct 150 GCTTTT 145
>seq285737
Length=776
Score = 87.8 bits (96), Expect = 2e-12
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772
||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 721 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCC 776
>seq2993441
Length=624
Score = 86.0 bits (94), Expect = 7e-12
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGA 136768
||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 571 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGA 622
>seq3064036
Length=1428
Score = 84.2 bits (92), Expect = 2e-11
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 136722 CAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 1 CAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 54
>seq2700823
Length=198
Score = 84.2 bits (92), Expect = 2e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 136724 GTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTTGGGAACA 136783
|||||||||||||||||||| |||||||||||||| ||||||||| |||||| || ||
Sbjct 198 GTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCA 139
Query 136784 GCTTTT 136789
||| ||
Sbjct 138 GCTATT 133
>seq147647
Length=13072
Score = 84.2 bits (92), Expect = 2e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| ||||| ||||||||| ||||| || ||||||
Sbjct 3074 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACACCAAGGTCATGGGTTTGATCCCCGT 3132
>seq20229
Length=11930
Score = 82.4 bits (90), Expect = 9e-11
Identities = 112/154 (73%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 110316 CTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACC 110375
||| |||||| ||| || |||| ||||| || |||| |||| | || ||| ||
Sbjct 4828 CTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCC 4887
Query 110376 CAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTAC 110434
|||||||| ||| || | || || || || | ||| || |||||||||||||||||||
Sbjct 4888 CAAGTTCTGCTGGTTGCTCTTCCGA-TTACAGGAATCTTTGTAGAGCATGTATGGGGTAC 4946
Query 110435 CAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCA 110468
| || || ||||| |||| | ||||| | |||
Sbjct 4947 CTGTCTCTGTCTGAGACTCAATGATGGCATACCA 4980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566237764315800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |