Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2976925 109 6e-19 seq3058874 96.9 4e-15 seq356191 96.9 4e-15 seq343629 93.3 5e-14 seq338450 93.3 5e-14 seq320552 93.3 5e-14 seq56076 93.3 5e-14 seq35099 93.3 5e-14 seq7313 93.3 5e-14 seq198618 89.7 6e-13 seq101679 89.7 6e-13 seq49630 89.7 6e-13 seq2739903 87.8 2e-12 seq285737 87.8 2e-12 seq2993441 86.0 7e-12 seq3064036 84.2 2e-11 seq2700823 84.2 2e-11 seq147647 84.2 2e-11 seq20229 82.4 9e-11 >seq2976925 Length=544 Score = 109 bits (120), Expect = 6e-19 Identities = 160/221 (72%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 || ||| || ||||||||||| || || || ||| || || | || |||||| || Sbjct 217 CTGACGGTCAAAACGACCTGGACGCAGCAGCGCAGGGTCCAGTACGTCAGGACGGTTAGT 158 Query 11559 AGCGGCAATGACTACAATGCCAGTC--TCATTGTCGAAACCGTCCATTTCTGTGAGAAGC 11616 || |||||||| | ||||| ||| ||||| ||||| |||||||| || || | | Sbjct 157 CGCAGCAATGACGATGATGCC-GTCATTCATT-TCGAAGCCGTCCATCTCCACCAGCAAC 100 Query 11617 TGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCT 11674 ||||||| ||||||||||||||||||| || || ||| || || ||| | Sbjct 99 TGGTTGAGGGTCTGTTCACGCTCATCGT--GACCGCCACCCATGCCAGCACCACGATGGC 42 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGT 11715 ||| |||||||| || ||||||||||| | ||| |||||| Sbjct 41 GACCAACAGCGTCGATTTCATCGATGAAGATGATGCACGGT 1 >seq3058874 Length=1308 Score = 96.9 bits (106), Expect = 4e-15 Identities = 201/291 (69%), Gaps = 10/291 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| || || || ||| || || | || |||||| || ||| Sbjct 460 CGGTCAAAACGGCCTGGACGCAGCAGCGCAGGGTCCAGTACGTCCGGACGGTTGGTTGCG 519 Query 11563 GCAATGACTACAATGCCAGTC--TCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 || ||||| | ||||| ||| |||| |||||||||||||| || || | ||||| Sbjct 520 GCGATGACGATGATGCC-GTCATTCATC-TCGAAACCGTCCATCTCCACCAGTAACTGGT 577 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCTTACC 11678 ||| |||||||||||||| || | || || ||| || || ||| | ||| Sbjct 578 TGAGGGTCTGTTCACGCTCGTCAT--GACCGCCACCCATGCCGGCGCCACGATGGCGACC 635 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT-GCCTGTTCGA 11737 || || || || || || ||||| | ||| || || | || | | |||||||||| Sbjct 636 CACGGCATCGATTTCGTCAATGAAGATGATGCATGG-CGCGTGCTTCTTGGCCTGTTCGA 694 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 | | || || ||||| | || || ||||| ||||||||||| || |||| Sbjct 695 ACATATCGCGAACACGGCTGGCACCGACACCGACGAACATCTCGACAAAGT 745 >seq356191 Length=1159 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/224 (72%), Gaps = 14/224 (6%) Strand=Plus/Plus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACA---CGGTT 11555 || ||| || ||||||||||| || || || ||| || | ||| || || ||||| Sbjct 328 CTGACGGTCAAAACGACCTGGACGCAGCAGCGCAGGGTCCA--ATA-CGTCAGGGCGGTT 384 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTC--TCATTGTCGAAACCGTCCATTTCTGTGAGA 11613 || || |||||||| | ||||| ||| ||||| ||||| |||||||| || || Sbjct 385 AGTCGCAGCAATGACGATGATGCC-GTCATTCATT-TCGAAGCCGTCCATCTCAACTAGC 442 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCT 11671 | |||||||| ||||| ||||||||||||| || || ||| || || ||| | Sbjct 443 AACTGGTTGAGGGTCTGCTCACGCTCATCGT--GACCGCCGCCCATGCCAGCACCACGAT 500 Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGT 11715 ||| |||||||| || ||||||||||| | ||| |||||| Sbjct 501 GGCGACCAACAGCGTCGATTTCATCGATGAAGATGATGCACGGT 544 >seq343629 Length=7557 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 6246 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 6188 >seq338450 Length=2752 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 2049 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 2107 >seq320552 Length=16403 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 8768 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 8826 >seq56076 Length=18430 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 9986 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 10044 >seq35099 Length=28473 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 14259 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 14201 >seq7313 Length=16021 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 12257 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 12199 >seq198618 Length=28570 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| |||||| Sbjct 18051 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCTCAGGTTCGATCCCCGT 18109 >seq101679 Length=1773 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||| |||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 569 TAGCTCAGCTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 511 >seq49630 Length=15172 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||| Sbjct 14071 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCGAGGTCGCGGGTTCGATCCCCGT 14013 >seq2739903 Length=210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 136724 GTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTTGGGAACA 136783 |||||||||||||||||||| |||||||||||||| ||||||||| |||||| || || Sbjct 210 GTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCA 151 Query 136784 GCTTTT 136789 |||||| Sbjct 150 GCTTTT 145 >seq285737 Length=776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| Sbjct 721 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCC 776 >seq2993441 Length=624 Score = 86.0 bits (94), Expect = 7e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGA 136768 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 571 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGA 622 >seq3064036 Length=1428 Score = 84.2 bits (92), Expect = 2e-11 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 136722 CAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 1 CAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 54 >seq2700823 Length=198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 136724 GTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTTGGGAACA 136783 |||||||||||||||||||| |||||||||||||| ||||||||| |||||| || || Sbjct 198 GTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTACGGGCCA 139 Query 136784 GCTTTT 136789 ||| || Sbjct 138 GCTATT 133 >seq147647 Length=13072 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| ||||| ||||||||| ||||| || |||||| Sbjct 3074 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACACCAAGGTCATGGGTTTGATCCCCGT 3132 >seq20229 Length=11930 Score = 82.4 bits (90), Expect = 9e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 110316 CTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACC 110375 ||| |||||| ||| || |||| ||||| || |||| |||| | || ||| || Sbjct 4828 CTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCC 4887 Query 110376 CAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTAC 110434 |||||||| ||| || | || || || || | ||| || ||||||||||||||||||| Sbjct 4888 CAAGTTCTGCTGGTTGCTCTTCCGA-TTACAGGAATCTTTGTAGAGCATGTATGGGGTAC 4946 Query 110435 CAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCA 110468 | || || ||||| |||| | ||||| | ||| Sbjct 4947 CTGTCTCTGTCTGAGACTCAATGATGGCATACCA 4980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566237764315800