Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq197607 109 6e-19
seq3058874 95.1 1e-14
seq2658871 86.0 7e-12
>seq197607
Length=1217
Score = 109 bits (120), Expect = 6e-19
Identities = 255/376 (68%), Gaps = 14/376 (4%)
Strand=Plus/Minus
Query 9188 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9247
|| ||| || || || |||||||| || | ||| ||||| | ||| || || ||
Sbjct 622 CTGACGGTCGAAACGGCCTGGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGT 563
Query 9248 CGCGGCGATGACAACAATACC-TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTT 9306
|||||||||||| | || || | |||||| || || || |||||||| || | ||
Sbjct 562 CGCGGCGATGACGATGATGCCGTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATT 504
Query 9307 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTT 9364
|||| | || || || || ||||||| | | ||| || || | ||| ||
Sbjct 503 GGTTGAGGGTCTGCTCGCGCTCATCAT--GACCACCACCCATGCCGGCGCCGCGATGGCG 446
Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT---TGATTTTCGCGGGCGAT 9421
||||||||||| || || || ||||||| || || ||| || || | |||
Sbjct 445 ACCCACGGCATCGATTTCGTCGATGAAGATGATGCACGGTGCGTGCTTCT---TGGCCTG 389
Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481
||| || | ||||||||| | |||| |||||||| || ||||| || ||||||| |
Sbjct 388 TTCGAACATATCGCGAACACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGA 329
Query 9482 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540
||||| || | || ||| || || || | |||||| ||||| || ||| || | |
Sbjct 328 ACCGGAA-ATGGTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGG 270
Query 9541 TCTTACCCGTACCTGG 9556
| ||||| ||||| ||
Sbjct 269 TTTTACCGGTACCCGG 254
>seq3058874
Length=1308
Score = 95.1 bits (104), Expect = 1e-14
Identities = 250/373 (67%), Gaps = 14/373 (4%)
Strand=Plus/Plus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
|| ||||| || |||||||| || ||||| || || | || || || || |||
Sbjct 460 CGGTCAAAACGGCCTGGACGCAGCAGCGCAGGGTCCAGTACGTCCGGACGGTTGGTTGCG 519
Query 9252 GCGATGACAACAATACC-TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310
|||||||| | || || | ||||| || ||||| |||||||| || | |||||
Sbjct 520 GCGATGACGATGATGCCGTCATTCATC-TCGAAACCGTCCATCTCCACCAGTAACTGGTT 578
Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCC 9368
| || ||||| || || |||| | || ||| || || | || || |||
Sbjct 579 GAGGGTCTGTTCACGCTCGTCATGACC--GCCACCCATGCCGGCGCCACGATGGCGACCC 636
Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGG---TTGATTTTCGCGGGCGATTTCA 9425
|||||||| || || |||||||||| || ||||| || || | ||| |||
Sbjct 637 ACGGCATCGATTTCGTCAATGAAGATGATGCATGGCGCGTGCTTCT---TGGCCTGTTCG 693
Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485
|| | ||||||||| | |||| || ||||| || |||||||| ||||||| | ||
Sbjct 694 AACATATCGCGAACACGGCTGGCACCGACACCGACGAACATCTCGACAAAGTCAGAACCG 753
Query 9486 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544
||| || | | ||| || || || | ||| || ||||| || ||| || | || ||
Sbjct 754 GAA-ATGGTAAAGAACGGCACTTTGGCTTCGCCGGCAATCGCCTTGGCCAGCAAGGTTTT 812
Query 9545 ACCCGTACCTGGC 9557
||| ||||| |||
Sbjct 813 ACCGGTACCCGGC 825
>seq2658871
Length=189
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044
||| || || |||| ||||||||||||||| |||||||| || || ||| ||||||||
Sbjct 105 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCAT 164
Query 117045 AAAGTCAAATGGATT 117059
|||||||||||||||
Sbjct 165 AAAGTCAAATGGATT 179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 567203772617640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |