Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq197607 109 6e-19 seq3058874 95.1 1e-14 seq2658871 86.0 7e-12 >seq197607 Length=1217 Score = 109 bits (120), Expect = 6e-19 Identities = 255/376 (68%), Gaps = 14/376 (4%) Strand=Plus/Minus Query 9188 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9247 || ||| || || || |||||||| || | ||| ||||| | ||| || || || Sbjct 622 CTGACGGTCGAAACGGCCTGGACGCAGCAACGCAGGGTCAAGCACATCCGGACGGTTAGT 563 Query 9248 CGCGGCGATGACAACAATACC-TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTT 9306 |||||||||||| | || || | |||||| || || || |||||||| || | || Sbjct 562 CGCGGCGATGACGATGATGCCGTCATTCATT-TCGAAGCCGTCCATCTCAACCAGCAATT 504 Query 9307 GGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTT 9364 |||| | || || || || ||||||| | | ||| || || | ||| || Sbjct 503 GGTTGAGGGTCTGCTCGCGCTCATCAT--GACCACCACCCATGCCGGCGCCGCGATGGCG 446 Query 9365 TCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT---TGATTTTCGCGGGCGAT 9421 ||||||||||| || || || ||||||| || || ||| || || | ||| Sbjct 445 ACCCACGGCATCGATTTCGTCGATGAAGATGATGCACGGTGCGTGCTTCT---TGGCCTG 389 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 ||| || | ||||||||| | |||| |||||||| || ||||| || ||||||| | Sbjct 388 TTCGAACATATCGCGAACACGGCTGGCACCCACACCGACGAACATTTCGACAAAGTCAGA 329 Query 9482 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 ||||| || | || ||| || || || | |||||| ||||| || ||| || | | Sbjct 328 ACCGGAA-ATGGTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCTTGGCCAGCAAGG 270 Query 9541 TCTTACCCGTACCTGG 9556 | ||||| ||||| || Sbjct 269 TTTTACCGGTACCCGG 254 >seq3058874 Length=1308 Score = 95.1 bits (104), Expect = 1e-14 Identities = 250/373 (67%), Gaps = 14/373 (4%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || |||||||| || ||||| || || | || || || || ||| Sbjct 460 CGGTCAAAACGGCCTGGACGCAGCAGCGCAGGGTCCAGTACGTCCGGACGGTTGGTTGCG 519 Query 9252 GCGATGACAACAATACC-TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 |||||||| | || || | ||||| || ||||| |||||||| || | ||||| Sbjct 520 GCGATGACGATGATGCCGTCATTCATC-TCGAAACCGTCCATCTCCACCAGTAACTGGTT 578 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCC 9368 | || ||||| || || |||| | || ||| || || | || || ||| Sbjct 579 GAGGGTCTGTTCACGCTCGTCATGACC--GCCACCCATGCCGGCGCCACGATGGCGACCC 636 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGG---TTGATTTTCGCGGGCGATTTCA 9425 |||||||| || || |||||||||| || ||||| || || | ||| ||| Sbjct 637 ACGGCATCGATTTCGTCAATGAAGATGATGCATGGCGCGTGCTTCT---TGGCCTGTTCG 693 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || | ||||||||| | |||| || ||||| || |||||||| ||||||| | || Sbjct 694 AACATATCGCGAACACGGCTGGCACCGACACCGACGAACATCTCGACAAAGTCAGAACCG 753 Query 9486 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 ||| || | | ||| || || || | ||| || ||||| || ||| || | || || Sbjct 754 GAA-ATGGTAAAGAACGGCACTTTGGCTTCGCCGGCAATCGCCTTGGCCAGCAAGGTTTT 812 Query 9545 ACCCGTACCTGGC 9557 ||| ||||| ||| Sbjct 813 ACCGGTACCCGGC 825 >seq2658871 Length=189 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCAT 117044 ||| || || |||| ||||||||||||||| |||||||| || || ||| |||||||| Sbjct 105 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCAT 164 Query 117045 AAAGTCAAATGGATT 117059 ||||||||||||||| Sbjct 165 AAAGTCAAATGGATT 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567203772617640