Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2807236 122 1e-22 >seq2807236 Length=239 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 154875 ATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAG 154934 ||||| || || || || || |||||||| | ||| | ||||| | | || || Sbjct 10 ATGATCACTTATCCTTCAACGCATGGTGTTTATGAGGAAAGCATTAAAGACATTTGCGCT 69 Query 154935 ATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTA 154994 || | ||||| |||||||| || || ||| ||||||| || ||| ||||||| | ||| Sbjct 70 ATTATCCATGAAAATGGTGGGCAAGTTTATTTTGATGGGGCCAATTTAAATGCGCTTGTA 129 Query 154995 GGACTAGCAAAACCATGTGAGTATGGT-GCAGATGTATGTCATCTAAACTTACATAAAAC 155053 || || ||| ||| || ||||| |||||||| |||||| | || | |||||||| Sbjct 130 GGTCTTGCACGCCCAGCAGA-TATGGGAGCAGATGTTTGTCATATGAATCTTCATAAAAC 188 Query 155054 ATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||| ||||| ||||| ||||| |||||||| || || || || ||||| Sbjct 189 ATTTGCAATTCCTCATGGTGGTGGTGGTCCTGGTGTTGGGCCGATTGGTGT 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851486198240