Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3086203 93.3 5e-14 >seq3086203 Length=3793 Score = 93.3 bits (102), Expect = 5e-14 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 32471 AAAGACCTGATAGGGATACCATGGATGTTAGCATTTGCATTACGTGCTGATGGATGGTAT 32530 ||||||||||| || | || ||| | || || || | | | |||||| ||||| Sbjct 1441 AAAGACCTGATGGGCGTGCCCTGGCGACTCGCCTTCGCCCTTCAAGATGATGGCTGGTAC 1382 Query 32531 CTACGTCAGGATATTATATGGCATAAACCTAACCCTATGCCAGAGTCTGTCAAGGACAGA 32590 || |||||||| || || ||||||||||| ||||| ||||| || || ||||||| | Sbjct 1381 CTGCGTCAGGACATCATCTGGCATAAACCGAACCCCATGCCTGAATCCACCAAGGACCGG 1322 Query 32591 TGTACTAAATCACATGAGTACCT-ATTCTTATTATCTAAAAACAAAAAG-TATTATTATG 32648 || || || || ||||||||||| |||| | | | || || | | ||||| || | Sbjct 1321 TGCACAAAGTCGCATGAGTACCTGTTTCTCCTGAGC--AAGTCACCACGTTATTACTACG 1264 Query 32649 ACAATGAAGCAATCAAAGAACC 32670 || | || || ||||| ||||| Sbjct 1263 ACCAGGATGCGATCAAGGAACC 1242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565348667502960