Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq1838051 87.8 2e-12 >seq1838051 Length=127 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/123 (77%), Gaps = 6/123 (5%) Strand=Plus/Minus Query 22493 GGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAGTCTCCTATTCTCCACTCA 22552 ||||| |||||||||||| ||||||||||||||||||||| || ||| | | || || Sbjct 124 GGTAGCGCGCCTGCTTTGGGAGCAGGATGTCAGGAGTTCGAATCCCCT-TACCCCGACCA 66 Query 22553 AT----CCTCTTTAGCTCAG-CGGTAGAGCGGTTGACTGTTAATCAATTGGTCCCTGGTT 22607 | || ||||||||| |||||||| |||| || |||| ||||||||| |||| Sbjct 65 TTTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGTAGGTT 6 Query 22608 CGA 22610 ||| Sbjct 5 CGA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538964950316400