Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq366846 96.9 1e-15 seq3023355 93.3 1e-14 seq2815396 87.8 5e-13 seq284340 87.8 5e-13 >seq366846 Length=1509 Score = 96.9 bits (106), Expect = 1e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| || || || ||||||||| | || |||| ||| | |||||| |||| Sbjct 480 CTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAA 421 Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 || || | |||||||| ||| || ||||||| ||||| || || | ||||||||| Sbjct 420 CAACGCCCGAACAAGCGCCCGGTGAACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAG 361 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776 || ||||| ||||| | | || || ||||||||| ||| |||| |||| || Sbjct 360 GATGCTGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAGACGGAACAC 301 Query 37777 AAAGGCGTCACTGAAATCATC 37797 |||||| | | ||||||||| Sbjct 300 AAAGGCATTGCCGAAATCATC 280 >seq3023355 Length=832 Score = 93.3 bits (102), Expect = 1e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| || || || ||||||||| | || |||| ||| | |||||| ||||| Sbjct 596 CTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAG 655 Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 || || | |||||||| ||| || ||||||| || || || || | ||||||||| Sbjct 656 CAACGGCCGAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAG 715 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776 || || || ||||| | | || || ||||||||| ||| |||| |||| ||| Sbjct 716 GATGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAGACGGAGCAC 775 Query 37777 AAAGGCGTCACTGAAATCATC 37797 |||||| | | || |||||| Sbjct 776 AAAGGCATTGCCGAGATCATC 796 >seq2815396 Length=244 Score = 87.8 bits (96), Expect = 5e-13 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| || || || ||||||||| | || |||| ||| | |||||| |||| Sbjct 243 CTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCGCAGCTCAACCGTTCCCTGGAA 184 Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 |||||| | |||||||| ||| || ||||| | || || || || | ||||||||| Sbjct 183 CAGCGTCCCAACAAGCGCCCGGTGAACTCCGACCTGCGCGAATCCGGAGCGATCGAGCAG 124 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776 || ||||| ||||| | | || || || |||||| |||| |||| | || || Sbjct 123 GATGCTGACGTGATCATGTTTGTGTACCGGGACGAGGTGTACCACCCCGAAACGGAACAT 64 Query 37777 AAAGGCGTCACTGAAATCATC 37797 |||||| | | || |||||| Sbjct 63 AAAGGCATTGCCGAGATCATC 43 >seq284340 Length=15504 Score = 87.8 bits (96), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 29843 GGTGATTACTGCGTTAACGAGCTGTGCTTCATAGCCCAAAGTGCCG---TTTACAAGGTG 29899 ||| || |||||||| |||||||| || || |||| ||| | |||| || || | | Sbjct 1924 GGTAATCACTGCGTTGACGAGCTGCGCCTCGTAGCTCAATGCGCCGCCGTTGACGATGAA 1983 Query 29900 TGTTTTTTGAGCCACGGCGAAGGGATTCATTCCCCACTGCGCGGCCTGTAGCGCAACCGC 29959 ||| || || ||||||||||||||||||||| ||| ||| ||| || ||| | ||||| Sbjct 1984 TGTCTTCTGCGCCACGGCGAAGGGATTCATTTGCCATTGCATGGCTTGAAGCACCACCGC 2043 Query 29960 CA 29961 || Sbjct 2044 CA 2045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145626834770262