Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_015295.1
Length=47279
Score E
Sequences producing significant alignments: (Bits) Value
seq366846 96.9 1e-15
seq3023355 93.3 1e-14
seq2815396 87.8 5e-13
seq284340 87.8 5e-13
>seq366846
Length=1509
Score = 96.9 bits (106), Expect = 1e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656
||||| || || || ||||||||| | || |||| ||| | |||||| ||||
Sbjct 480 CTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAA 421
Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716
|| || | |||||||| ||| || ||||||| ||||| || || | |||||||||
Sbjct 420 CAACGCCCGAACAAGCGCCCGGTGAACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAG 361
Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776
|| ||||| ||||| | | || || ||||||||| ||| |||| |||| ||
Sbjct 360 GATGCTGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAGACGGAACAC 301
Query 37777 AAAGGCGTCACTGAAATCATC 37797
|||||| | | |||||||||
Sbjct 300 AAAGGCATTGCCGAAATCATC 280
>seq3023355
Length=832
Score = 93.3 bits (102), Expect = 1e-14
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656
||||| || || || ||||||||| | || |||| ||| | |||||| |||||
Sbjct 596 CTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAG 655
Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716
|| || | |||||||| ||| || ||||||| || || || || | |||||||||
Sbjct 656 CAACGGCCGAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAG 715
Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776
|| || || ||||| | | || || ||||||||| ||| |||| |||| |||
Sbjct 716 GATGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAGACGGAGCAC 775
Query 37777 AAAGGCGTCACTGAAATCATC 37797
|||||| | | || ||||||
Sbjct 776 AAAGGCATTGCCGAGATCATC 796
>seq2815396
Length=244
Score = 87.8 bits (96), Expect = 5e-13
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656
||||| || || || ||||||||| | || |||| ||| | |||||| ||||
Sbjct 243 CTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCGCAGCTCAACCGTTCCCTGGAA 184
Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716
|||||| | |||||||| ||| || ||||| | || || || || | |||||||||
Sbjct 183 CAGCGTCCCAACAAGCGCCCGGTGAACTCCGACCTGCGCGAATCCGGAGCGATCGAGCAG 124
Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776
|| ||||| ||||| | | || || || |||||| |||| |||| | || ||
Sbjct 123 GATGCTGACGTGATCATGTTTGTGTACCGGGACGAGGTGTACCACCCCGAAACGGAACAT 64
Query 37777 AAAGGCGTCACTGAAATCATC 37797
|||||| | | || ||||||
Sbjct 63 AAAGGCATTGCCGAGATCATC 43
>seq284340
Length=15504
Score = 87.8 bits (96), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 29843 GGTGATTACTGCGTTAACGAGCTGTGCTTCATAGCCCAAAGTGCCG---TTTACAAGGTG 29899
||| || |||||||| |||||||| || || |||| ||| | |||| || || | |
Sbjct 1924 GGTAATCACTGCGTTGACGAGCTGCGCCTCGTAGCTCAATGCGCCGCCGTTGACGATGAA 1983
Query 29900 TGTTTTTTGAGCCACGGCGAAGGGATTCATTCCCCACTGCGCGGCCTGTAGCGCAACCGC 29959
||| || || ||||||||||||||||||||| ||| ||| ||| || ||| | |||||
Sbjct 1984 TGTCTTCTGCGCCACGGCGAAGGGATTCATTTGCCATTGCATGGCTTGAAGCACCACCGC 2043
Query 29960 CA 29961
||
Sbjct 2044 CA 2045
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145626834770262
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |