Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq300236 134 3e-26
seq66256 131 4e-25
seq185925 123 5e-23
seq155098 123 5e-23
seq2409662 100 6e-16
seq2340502 98.7 2e-15
seq1887490 98.7 2e-15
seq234195 96.9 7e-15
seq1559739 95.1 3e-14
seq317140 89.7 1e-12
>seq300236
Length=7644
Score = 134 bits (148), Expect = 3e-26
Identities = 166/226 (73%), Gaps = 6/226 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|||||| | | || ||||| |||||||||||||| || || ||||| || | ||| ||
Sbjct 7635 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGT 7576
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| ||||| || || || ||||| | | || ||||||||||| |||||
Sbjct 7575 GCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCC 7516
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
||||| ||||| || || |||||| |||||||||||||| ||| ||||| ||
Sbjct 7515 CTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 7459
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || | || || || || | || ||||| || | ||||||
Sbjct 7458 CAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413
>seq66256
Length=6617
Score = 131 bits (144), Expect = 4e-25
Identities = 158/214 (74%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||||| || || |||||||| | |||||| | ||||||||
Sbjct 1625 ACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1566
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| | || ||||| || | || ||||| || ||||||||||| || || ||
Sbjct 1565 AGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1506
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| |||||||| |||||||| ||| || || || ||||| | |||
Sbjct 1505 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCTACCTCCAGGGTGATGGTC 1449
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| || |||| || || ||||| | ||||||||
Sbjct 1448 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTT 1415
>seq185925
Length=7279
Score = 123 bits (136), Expect = 5e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| || || |||||||||||||| |||||||| ||||| || | | |||
Sbjct 299 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 358
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| || ||||| || || |||| ||| ||| ||||| |||||||| |||||
Sbjct 359 CCATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCC 418
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| || || || || || ||| | ||| || ||||| ||
Sbjct 419 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTG 478
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || |||| || || | ||| | |||||
Sbjct 479 ATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCAT 516
>seq155098
Length=7669
Score = 123 bits (136), Expect = 5e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| || || |||||||||||||| |||||||| |||| || | | ||| |
Sbjct 7220 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGT 7279
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||||| || ||||| || || ||||| ||| ||| ||||| |||||||| |||||
Sbjct 7280 TCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCC 7339
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| || || || || || ||||| ||| || || || ||
Sbjct 7340 TTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 7399
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || |||| || || || || | |||||
Sbjct 7400 ATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437
>seq2409662
Length=152
Score = 100 bits (110), Expect = 6e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || |||||||| | |||||| | ||||||||
Sbjct 19 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 78
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || ||||| || ||||||||||| || || ||
Sbjct 79 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 138
Query 195052 ATTTT 195056
|| ||
Sbjct 139 ATCTT 143
>seq2340502
Length=142
Score = 98.7 bits (108), Expect = 2e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 194952 TTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGAT 195011
||| || || ||||| || | || || | ||||||||| ||||| || ||||| |||||
Sbjct 142 TTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGAT 83
Query 195012 AAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTC 195071
| | || |||||||| || ||||| ||||||||||| || || |||||| |||||
Sbjct 82 CAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTC 23
Query 195072 AATGGTGTC 195080
||||||||
Sbjct 22 GATGGTGTC 14
>seq1887490
Length=127
Score = 98.7 bits (108), Expect = 2e-15
Identities = 98/127 (77%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 194952 TTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGAT 195011
||| || || ||||| || | || || | ||||||||| ||||| || ||||| |||||
Sbjct 127 TTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGAT 68
Query 195012 AAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTC 195071
| || || |||||||| || ||||| ||||||||||| || || |||||| |||||
Sbjct 67 CAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTC 8
Query 195072 AATGGTG 195078
||||||
Sbjct 7 GATGGTG 1
>seq234195
Length=9622
Score = 96.9 bits (106), Expect = 7e-15
Identities = 114/152 (75%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 194924 GTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTA-ATCGGCAAGAGTTCTC 194982
||||||| |||||||||||||||||||| || | ||| ||||| || ||||| || |
Sbjct 1890 GTCTCAACACAAGGTGAAGAGTGGACTCCTTCTAAATGTTGTAGATAGGCAA-AGGACAT 1832
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||||| || | ||| || || | ||| |||| ||| ||||| ||||||| |||||
Sbjct 1831 TCATCTTCCAGTTCCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCC 1772
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074
|| || || || || ||| || || || ||
Sbjct 1771 TTATCCTGGATCTTGGCCTTTACATTTTCTAT 1740
>seq1559739
Length=125
Score = 95.1 bits (104), Expect = 3e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| || | || || | ||||||||| ||||| || ||||| |||||
Sbjct 1 TTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGATC 60
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
|| | || |||||||| || ||||| ||||||||||| || || |||||| |||||
Sbjct 61 AGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCG 120
Query 195073 ATGGT 195077
|||||
Sbjct 121 ATGGT 125
>seq317140
Length=4972
Score = 89.7 bits (98), Expect = 1e-12
Identities = 131/182 (72%), Gaps = 9/182 (5%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||||||||||| || |||||||| || | |||| |||| || |||||
Sbjct 4429 GTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGTGTAGCCATGCTCCAGCTG 4370
Query 194997 C--TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054
| | || |||| || || || ||||||| || || ||||| || |||||||| |||
Sbjct 4369 CGTGTGCCCGCGACAATCAGCCGCGGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATT 4310
Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111
|| ||||| |||||| ||||||| ||| ||| | |||||||||| |||||
Sbjct 4309 TTGGCTTTGACATTCTCAGTGGTGTC---ACTGGGCTCC-CCTCAAGGGTAATTGTCTTG 4254
Query 195112 CC 195113
||
Sbjct 4253 CC 4252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1065577696511937
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |