Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq300236 134 3e-26 seq66256 131 4e-25 seq185925 123 5e-23 seq155098 123 5e-23 seq2409662 100 6e-16 seq2340502 98.7 2e-15 seq1887490 98.7 2e-15 seq234195 96.9 7e-15 seq1559739 95.1 3e-14 seq317140 89.7 1e-12 >seq300236 Length=7644 Score = 134 bits (148), Expect = 3e-26 Identities = 166/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| || | ||| || Sbjct 7635 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGT 7576 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || ||||||||||| ||||| Sbjct 7575 GCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCC 7516 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||| ||||| || || |||||| |||||||||||||| ||| ||||| || Sbjct 7515 CTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 7459 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | || || || || | || ||||| || | |||||| Sbjct 7458 CAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413 >seq66256 Length=6617 Score = 131 bits (144), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||||| || || |||||||| | |||||| | |||||||| Sbjct 1625 ACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1566 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| | || ||||| || | || ||||| || ||||||||||| || || || Sbjct 1565 AGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1506 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| || || || ||||| | ||| Sbjct 1505 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCTACCTCCAGGGTGATGGTC 1449 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | |||||||| Sbjct 1448 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTT 1415 >seq185925 Length=7279 Score = 123 bits (136), Expect = 5e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||||||||||||| |||||||| ||||| || | | ||| Sbjct 299 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 358 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || |||| ||| ||| ||||| |||||||| ||||| Sbjct 359 CCATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCC 418 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || ||| | ||| || ||||| || Sbjct 419 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTG 478 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||| || || | ||| | ||||| Sbjct 479 ATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCAT 516 >seq155098 Length=7669 Score = 123 bits (136), Expect = 5e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||||||||||||| |||||||| |||| || | | ||| | Sbjct 7220 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGT 7279 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| || ||||| || || ||||| ||| ||| ||||| |||||||| ||||| Sbjct 7280 TCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCC 7339 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || ||||| ||| || || || || Sbjct 7340 TTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 7399 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||| || || || || | ||||| Sbjct 7400 ATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437 >seq2409662 Length=152 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 19 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 78 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| || || || Sbjct 79 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 138 Query 195052 ATTTT 195056 || || Sbjct 139 ATCTT 143 >seq2340502 Length=142 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 194952 TTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGAT 195011 ||| || || ||||| || | || || | ||||||||| ||||| || ||||| ||||| Sbjct 142 TTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGAT 83 Query 195012 AAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTC 195071 | | || |||||||| || ||||| ||||||||||| || || |||||| ||||| Sbjct 82 CAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTC 23 Query 195072 AATGGTGTC 195080 |||||||| Sbjct 22 GATGGTGTC 14 >seq1887490 Length=127 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 194952 TTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGAT 195011 ||| || || ||||| || | || || | ||||||||| ||||| || ||||| ||||| Sbjct 127 TTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGAT 68 Query 195012 AAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTC 195071 | || || |||||||| || ||||| ||||||||||| || || |||||| ||||| Sbjct 67 CAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTC 8 Query 195072 AATGGTG 195078 |||||| Sbjct 7 GATGGTG 1 >seq234195 Length=9622 Score = 96.9 bits (106), Expect = 7e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 194924 GTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTA-ATCGGCAAGAGTTCTC 194982 ||||||| |||||||||||||||||||| || | ||| ||||| || ||||| || | Sbjct 1890 GTCTCAACACAAGGTGAAGAGTGGACTCCTTCTAAATGTTGTAGATAGGCAA-AGGACAT 1832 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| || | ||| || || | ||| |||| ||| ||||| ||||||| ||||| Sbjct 1831 TCATCTTCCAGTTCCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCC 1772 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 || || || || || ||| || || || || Sbjct 1771 TTATCCTGGATCTTGGCCTTTACATTTTCTAT 1740 >seq1559739 Length=125 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | ||||||||| ||||| || ||||| ||||| Sbjct 1 TTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCTGCAAAGATC 60 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || | || |||||||| || ||||| ||||||||||| || || |||||| ||||| Sbjct 61 AGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCG 120 Query 195073 ATGGT 195077 ||||| Sbjct 121 ATGGT 125 >seq317140 Length=4972 Score = 89.7 bits (98), Expect = 1e-12 Identities = 131/182 (72%), Gaps = 9/182 (5%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || |||||||| || | |||| |||| || ||||| Sbjct 4429 GTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGTGTAGCCATGCTCCAGCTG 4370 Query 194997 C--TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 | | || |||| || || || ||||||| || || ||||| || |||||||| ||| Sbjct 4369 CGTGTGCCCGCGACAATCAGCCGCGGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATT 4310 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111 || ||||| |||||| ||||||| ||| ||| | |||||||||| ||||| Sbjct 4309 TTGGCTTTGACATTCTCAGTGGTGTC---ACTGGGCTCC-CCTCAAGGGTAATTGTCTTG 4254 Query 195112 CC 195113 || Sbjct 4253 CC 4252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1065577696511937