Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq300236 118 7e-22
seq155098 87.8 1e-12
>seq300236
Length=7644
Score = 118 bits (130), Expect = 7e-22
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| |||||||| ||||| ||||| |||||| | || |||| |||
Sbjct 7622 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCTTCC 7563
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||| || | | ||||||||| | || | ||||| || ||
Sbjct 7562 AGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCTTTTTCTTGT 7503
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|||||| ||||| || || || | |||| || ||| || || | || |||||||
Sbjct 7502 ATCTTCCCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTT 7445
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || ||||| ||||| ||||||||||||||
Sbjct 7444 TACCAGTGAGGGTCTTTACAAAGATCTGCAT 7414
>seq155098
Length=7669
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826
||||| || | |||| ||| || || |||||| | ||||| || | | ||||||
Sbjct 7223 CTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTCA 7282
Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886
|| ||||| || || || ||||| || ||| ||||||||| | || | || |||||
Sbjct 7283 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTA 7342
Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
|| ||||| || || | |||| | || || || || |||| || |||
Sbjct 7343 TCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATG 7402
Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| || ||||| || ||||||||||| |||||||| ||
Sbjct 7403 GTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 7440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 312413992706808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |