Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq300236 118 7e-22 seq155098 87.8 1e-12 >seq300236 Length=7644 Score = 118 bits (130), Expect = 7e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| |||||| | || |||| ||| Sbjct 7622 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCTTCC 7563 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || | | ||||||||| | || | ||||| || || Sbjct 7562 AGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCTTTTTCTTGT 7503 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| ||||| || || || | |||| || ||| || || | || ||||||| Sbjct 7502 ATCTTCCCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTT 7445 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || ||||| ||||| |||||||||||||| Sbjct 7444 TACCAGTGAGGGTCTTTACAAAGATCTGCAT 7414 >seq155098 Length=7669 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| || | |||| ||| || || |||||| | ||||| || | | |||||| Sbjct 7223 CTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTCA 7282 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || ||||| || || || ||||| || ||| ||||||||| | || | || ||||| Sbjct 7283 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTA 7342 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| || || | |||| | || || || || |||| || ||| Sbjct 7343 TCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATG 7402 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || ||||| || ||||||||||| |||||||| || Sbjct 7403 GTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 7440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 312413992706808