Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq28392 172 6e-38 seq141641 132 5e-26 seq142543 111 2e-19 seq58757 111 2e-19 seq2658871 105 7e-18 seq2306809 96.9 4e-15 seq332822 84.2 2e-11 seq194669 84.2 2e-11 seq273157 82.4 8e-11 >seq28392 Length=738 Score = 172 bits (190), Expect = 6e-38 Identities = 278/397 (70%), Gaps = 2/397 (1%) Strand=Plus/Plus Query 18697 AAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTTTTTACA 18756 ||||| ||||| || ||||| | ||| ||| ||||||||| ||||||||||||| ||| Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 18757 TTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATAT 18816 | | | || | || || | || | | |||||||| || || || | || || Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120 Query 18817 GTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAAT 18876 ||||||| | || ||||| || || | || ||||| || || || || || || Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180 Query 18877 TCTTGTTCTATATTTACTGCCTCTGAT-ATAATAGATACAACTCTATCTTCATTAGGAGG 18935 || |||||||| | ||||| | ||| || || | ||||| | ||| ||| Sbjct 181 TCCTGTTCTATCCTAACTGCAT-TGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTT 239 Query 18936 GTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACT 18995 || | || ||||| ||||| | || ||||| ||||| || | ||||| ||||| || Sbjct 240 GTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCT 299 Query 18996 TATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || | |||| | ||||| || | |||||||||||||||| ||| || | ||||||||| Sbjct 300 AATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATAT 359 Query 19056 AGAAGCAAATGATCCAGAAAAGAATATACCTTCTACT 19092 || ||||| || || |||||||| || ||||| ||| Sbjct 360 CGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396 >seq141641 Length=332 Score = 132 bits (146), Expect = 5e-26 Identities = 151/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 19346 CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAA 19405 ||||||||||||| ||||| |||||||| |||||||| || || | ||||| ||||| Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273 Query 19406 AATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTTTAGATAAATCTACT 19464 ||| | | || || | | || | | || ||| | | ||| || || || | || || Sbjct 272 AATCTCTCTCCTCAG-GCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACC 214 Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524 || ||| |||||||||| |||||||| ||||| |||||||| | ||| |||||| | ||| Sbjct 213 TCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTAT 154 Query 19525 TGTATAGGAAATATAACAAA 19544 | |||||||| || ||||| Sbjct 153 TTAATAGGAAAGATGACAAA 134 >seq142543 Length=7870 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||||| ||||| || | || ||||| ||||||||||| ||| Sbjct 6769 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 6828 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 6829 AGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 6888 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 6889 ACCACCCTTTCCCC 6902 >seq58757 Length=22028 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || ||||| ||||| ||||| || || Sbjct 18138 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATTGAC 18197 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| || || ||||||||||| || |||||||| | |||| | ||| || Sbjct 18198 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 18257 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 18258 TTTCTTATACCATA 18271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 15922 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 15981 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCAT 47155 | | ||| || || |||||||| || || ||||| ||||||||||| Sbjct 15982 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCAGCTGCCAT 16027 >seq2658871 Length=189 Score = 105 bits (116), Expect = 7e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || || ||||||| | ||| ||||||||| | || || ||| |||||||| Sbjct 42 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTG--TCGGACTTGACATCACTCCCATC 99 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || ||||| | ||| ||| | Sbjct 100 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTT 159 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 160 TCCATAAAGTCAAATGGATTTTCTAC 185 >seq2306809 Length=138 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 19273 TTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTA 19332 ||||| || || || || || || || ||||| | ||||| || ||||| ||||| Sbjct 3 TTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTTGG 62 Query 19333 CAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAAT 19392 ||||| | || |||||||||||||| ||||| |||||||| |||||||| || || | Sbjct 63 CAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGC 122 Query 19393 ACATGTTTAATAAAAT 19408 ||||| |||||||| Sbjct 123 ACATGGGAAATAAAAT 138 >seq332822 Length=31618 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || |||| Sbjct 5209 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTTCC 5150 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 5149 ATAAAATCAAAGGGATTTT 5131 >seq194669 Length=4388 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||||||||||||| || ||||||||||| ||||||||||| ||||| | || |||| Sbjct 1255 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATA 1196 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 |||| || || ||||| | | | ||||| | | || ||| || |||||||| || Sbjct 1195 AAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 1137 >seq273157 Length=43465 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| ||||| || | | || Sbjct 39430 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 39371 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||||||||| ||| ||| ||||| || || || || | |||||| | ||| ||| Sbjct 39370 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 39311 Query 48720 ATATATTGAGGTCTTTCA 48737 || | ||| ||||||||| Sbjct 39310 ATGTGTTGTGGTCTTTCA 39293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540407809850040