Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 172 6e-38
seq141641 132 5e-26
seq142543 111 2e-19
seq58757 111 2e-19
seq2658871 105 7e-18
seq2306809 96.9 4e-15
seq332822 84.2 2e-11
seq194669 84.2 2e-11
seq273157 82.4 8e-11
>seq28392
Length=738
Score = 172 bits (190), Expect = 6e-38
Identities = 278/397 (70%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 18697 AAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTTTTTACA 18756
||||| ||||| || ||||| | ||| ||| ||||||||| ||||||||||||| |||
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 18757 TTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATAT 18816
| | | || | || || | || | | |||||||| || || || | || ||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 18817 GTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAAT 18876
||||||| | || ||||| || || | || ||||| || || || || || ||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 18877 TCTTGTTCTATATTTACTGCCTCTGAT-ATAATAGATACAACTCTATCTTCATTAGGAGG 18935
|| |||||||| | ||||| | ||| || || | ||||| | ||| |||
Sbjct 181 TCCTGTTCTATCCTAACTGCAT-TGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTT 239
Query 18936 GTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACT 18995
|| | || ||||| ||||| | || ||||| ||||| || | ||||| ||||| ||
Sbjct 240 GTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCT 299
Query 18996 TATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055
|| | |||| | ||||| || | |||||||||||||||| ||| || | |||||||||
Sbjct 300 AATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATAT 359
Query 19056 AGAAGCAAATGATCCAGAAAAGAATATACCTTCTACT 19092
|| ||||| || || |||||||| || ||||| |||
Sbjct 360 CGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq141641
Length=332
Score = 132 bits (146), Expect = 5e-26
Identities = 151/200 (76%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 19346 CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAA 19405
||||||||||||| ||||| |||||||| |||||||| || || | ||||| |||||
Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273
Query 19406 AATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTTTAGATAAATCTACT 19464
||| | | || || | | || | | || ||| | | ||| || || || | || ||
Sbjct 272 AATCTCTCTCCTCAG-GCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACC 214
Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524
|| ||| |||||||||| |||||||| ||||| |||||||| | ||| |||||| | |||
Sbjct 213 TCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTAT 154
Query 19525 TGTATAGGAAATATAACAAA 19544
| |||||||| || |||||
Sbjct 153 TTAATAGGAAAGATGACAAA 134
>seq142543
Length=7870
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | ||||| ||||| || | || ||||| ||||||||||| |||
Sbjct 6769 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 6828
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct 6829 AGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 6888
Query 19105 ACTAGTCTTTCTCC 19118
|| | ||||| ||
Sbjct 6889 ACCACCCTTTCCCC 6902
>seq58757
Length=22028
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || |||| || ||||| ||||| ||||| || ||
Sbjct 18138 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATTGAC 18197
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| || || ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 18198 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 18257
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 18258 TTTCTTATACCATA 18271
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || |
Sbjct 15922 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 15981
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCAT 47155
| | ||| || || |||||||| || || ||||| |||||||||||
Sbjct 15982 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCAGCTGCCAT 16027
>seq2658871
Length=189
Score = 105 bits (116), Expect = 7e-18
Identities = 112/146 (77%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || || ||||||| | ||| ||||||||| | || || ||| ||||||||
Sbjct 42 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTG--TCGGACTTGACATCACTCCCATC 99
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| || |||||||| ||||| || ||||| | ||| ||| |
Sbjct 100 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTT 159
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||||||||||| |||
Sbjct 160 TCCATAAAGTCAAATGGATTTTCTAC 185
>seq2306809
Length=138
Score = 96.9 bits (106), Expect = 4e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 19273 TTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTA 19332
||||| || || || || || || || ||||| | ||||| || ||||| |||||
Sbjct 3 TTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTTGG 62
Query 19333 CAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAAT 19392
||||| | || |||||||||||||| ||||| |||||||| |||||||| || || |
Sbjct 63 CAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGC 122
Query 19393 ACATGTTTAATAAAAT 19408
||||| ||||||||
Sbjct 123 ACATGGGAAATAAAAT 138
>seq332822
Length=31618
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732
||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || ||||
Sbjct 5209 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTTCC 5150
Query 18733 ATAAAATCAAATGGATTTT 18751
||||||||||| |||||||
Sbjct 5149 ATAAAATCAAAGGGATTTT 5131
>seq194669
Length=4388
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404
|||||||||||||| || ||||||||||| ||||||||||| ||||| | || ||||
Sbjct 1255 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATA 1196
Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463
|||| || || ||||| | | | ||||| | | || ||| || |||||||| ||
Sbjct 1195 AAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 1137
>seq273157
Length=43465
Score = 82.4 bits (90), Expect = 8e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || | ||| || | || ||||| ||||| ||||||| ||||| || | | ||
Sbjct 39430 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 39371
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
|||||||||||| ||| ||| ||||| || || || || | |||||| | ||| |||
Sbjct 39370 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 39311
Query 48720 ATATATTGAGGTCTTTCA 48737
|| | ||| |||||||||
Sbjct 39310 ATGTGTTGTGGTCTTTCA 39293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 540407809850040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |