Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_016071.1 Length=145964 Score E Sequences producing significant alignments: (Bits) Value seq134695 96.9 3e-15 seq3046662 93.3 4e-14 seq302243 93.3 4e-14 seq277625 86.0 6e-12 >seq134695 Length=2551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 197/286 (69%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 108520 GTAGGTGGCGCAGTACGTGACGGTTTGCTGGGCCGTGAAGTCCACGACCGTGACTACGTG 108579 || || || ||||||||||| | |||| |||| | | ||| ||| ||| ||| Sbjct 272 GTCGGCGGTGCAGTACGTGATCGCCTGCTTGGCCTTAAGGTCACCGATATCGACCGCGTC 331 Query 108580 GTTGTGGGTGCAACACAC-GAACAAATGATTGAAAAAGGGT-TCATCCAGGTTGGCGCTT 108637 |||||||| || || ||| ||| ||||| | | ||||| | | | ||| || |||||| Sbjct 332 GTTGTGGGCGCGAC-CACTGAAGAAATGCTCGCCAAAGGCTATAAGCCA-GTCGGCGCTG 389 Query 108638 CCTTCCCGGTATACCTCCATCCGGAGACCAAGGAAGAATACGCGCTCGCTCGAACTGAAC 108697 ||||||||||| ||| | || ||| || |||||||| ||||| || || |||| Sbjct 390 ACTTCCCGGTATTCCTGGACCCAAAGAATGGCGATGAATACGCCCTCGCCCGCACCGAAC 449 Query 108698 GTAAGGTTGGAAGCGGTCACAAAGGTTTTGAGACCTTT---TTCAGCCCTGATGTAACAC 108754 | ||| || | ||| | || |||| | ||| |||||| || || || | Sbjct 450 GCAAGAGCGGTCGGGGTTATGGCGGCTTTGTG---TTTCACGCCAGCCCCGAGGTCACGC 506 Query 108755 TGGCAGAAGACCTGTCTCGTCGGGATCTGACTATTAATGCGATGGC 108800 ||| |||||||||| ||| || || ||||| || || || ||||| Sbjct 507 TGGAAGAAGACCTGATTCGCCGCGACCTGACCATCAACGCCATGGC 552 >seq3046662 Length=1096 Score = 93.3 bits (102), Expect = 4e-14 Identities = 198/292 (68%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 108520 GTAGGTGGCGCAGTACGTGACGGTTTGCTGGGCCGTGAAGTCCACGACCGTGACTACGTG 108579 || || || || || ||||| | |||| |||| | ||| ||| ||| ||| Sbjct 56 GTCGGCGGTGCGGTGCGTGATCGCCTGCTCGGCCTCAAGGTCACCGATATCGACCGCGTT 115 Query 108580 GTTGTGGGTGCAACACAC-GAACAAATGATTGAAAAAGGGTTCATCCAGGTTGGCGCTTC 108638 || || ||||| || ||| ||||||||| | | ||||| | || | || |||||| Sbjct 116 GTGGTCGGTGCGAC-CACTGAACAAATGCTCGCCAAAGGCTACAAGCCAGTCGGCGCTGA 174 Query 108639 CTTCCCGGTATACCTCCATCCGGAGACCAAGGAAGAATACGCGCTCGCTCGAACTGAACG 108698 ||||||||||| ||| | || ||| | || |||||||| ||||| || || ||||| Sbjct 175 CTTCCCGGTATTCCTGGACCCCAAGAACGGCGACGAATACGCCCTCGCCCGCACCGAACG 234 Query 108699 TAAGGTTGGAAGCGGTCACAAAGGTTTTGAGACCTTT---TTCAGCCCTGATGTAACACT 108755 ||| || | ||| || || |||| | ||| |||||| || || || || Sbjct 235 CAAGAGCGGTCGGGGTTACGGCGGCTTTGTG---TTTCACGCCAGCCCCGAGGTGACGCT 291 Query 108756 GGCAGAAGACCTGTCTCGTCGGGATCTGACTATTAATGCGATGGCTCAGGAT 108807 || ||| |||||| ||| || || ||||| || || || ||||| ||||| Sbjct 292 GGAAGAGGACCTGATTCGCCGTGACCTGACCATCAACGCCATGGCCGAGGAT 343 >seq302243 Length=1145 Score = 93.3 bits (102), Expect = 4e-14 Identities = 195/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 108520 GTAGGTGGCGCAGTACGTGACGGTTTGCTGGGCCGTGAAGTCCACGACCGTGACTACGTG 108579 || || ||||| || ||||| || |||| ||| || ||| |||| ||| |||| Sbjct 56 GTCGGCGGCGCGGTGCGTGATCGTCTGCTCGGCATCGAGGTCACCGACATCGACCGCGTG 115 Query 108580 GTTGTGGGTGCAACACAC-GAACAAATGATTGAAAAAGGGTTCATCCAGGTTGGCGCTTC 108638 || || || ||||| ||| ||| ||||| | | || || | || | ||| || ||| Sbjct 116 GTCGTCGGCGCAAC-CACTGAAGAAATGCTCGCCAAGGGCTACAAGCCGGTGGGTGCTGA 174 Query 108639 CTTCCCGGTATACCTCCATCCGGAGACCAAGGAAGAATACGCGCTCGCTCGAACTGAACG 108698 ||||||||||| ||| ||| | | | || || ||||| || || || || || || Sbjct 175 CTTCCCGGTATTCCTGGCCCCGAAAAACGGCGATGAGTACGCCCTGGCCCGCACCGAGCG 234 Query 108699 TAAGGTTGGAAGCGGTCACAAAGGTTTTGAGACCTTTTTCAGCCCTGATGTAACACTGGC 108758 ||| ||| | ||| | || |||| | | |||||| || || || |||| Sbjct 235 CAAGAGTGGCCGGGGTTATGGCGGCTTTGTGTTTCATGCCAGCCCCGAGGTCACGCTGGA 294 Query 108759 AGAAGACCTGTCTCGTCGGGATCTGACTATTAATGCGATGGCTCAGGA 108806 |||||||||| |||||| || ||||| || || || ||||| |||| Sbjct 295 AGAAGACCTGATTCGTCGCGACCTGACCATCAACGCCATGGCGGAGGA 342 >seq277625 Length=52836 Score = 86.0 bits (94), Expect = 6e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 64169 TTGGAGGAGAGTGGAGGAATCGAACCCCTACCGTTTCCAGCACCACAGGGTTCAAACCTG 64228 |||||||| | |||||| ||||||||||||||||||||||| ||| ||||||||||| | Sbjct 34747 TTGGAGGAAGGCGGAGGAGTCGAACCCCTACCGTTTCCAGCAGCACCGGGTTCAAACCGG 34806 Query 64229 CTTGTCCACC 64238 |||| | ||| Sbjct 34807 CTTGCCTACC 34816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448929284833440