Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_016071.1
Length=145964
Score E
Sequences producing significant alignments: (Bits) Value
seq134695 96.9 3e-15
seq3046662 93.3 4e-14
seq302243 93.3 4e-14
seq277625 86.0 6e-12
>seq134695
Length=2551
Score = 96.9 bits (106), Expect = 3e-15
Identities = 197/286 (69%), Gaps = 10/286 (3%)
Strand=Plus/Plus
Query 108520 GTAGGTGGCGCAGTACGTGACGGTTTGCTGGGCCGTGAAGTCCACGACCGTGACTACGTG 108579
|| || || ||||||||||| | |||| |||| | | ||| ||| ||| |||
Sbjct 272 GTCGGCGGTGCAGTACGTGATCGCCTGCTTGGCCTTAAGGTCACCGATATCGACCGCGTC 331
Query 108580 GTTGTGGGTGCAACACAC-GAACAAATGATTGAAAAAGGGT-TCATCCAGGTTGGCGCTT 108637
|||||||| || || ||| ||| ||||| | | ||||| | | | ||| || ||||||
Sbjct 332 GTTGTGGGCGCGAC-CACTGAAGAAATGCTCGCCAAAGGCTATAAGCCA-GTCGGCGCTG 389
Query 108638 CCTTCCCGGTATACCTCCATCCGGAGACCAAGGAAGAATACGCGCTCGCTCGAACTGAAC 108697
||||||||||| ||| | || ||| || |||||||| ||||| || || ||||
Sbjct 390 ACTTCCCGGTATTCCTGGACCCAAAGAATGGCGATGAATACGCCCTCGCCCGCACCGAAC 449
Query 108698 GTAAGGTTGGAAGCGGTCACAAAGGTTTTGAGACCTTT---TTCAGCCCTGATGTAACAC 108754
| ||| || | ||| | || |||| | ||| |||||| || || || |
Sbjct 450 GCAAGAGCGGTCGGGGTTATGGCGGCTTTGTG---TTTCACGCCAGCCCCGAGGTCACGC 506
Query 108755 TGGCAGAAGACCTGTCTCGTCGGGATCTGACTATTAATGCGATGGC 108800
||| |||||||||| ||| || || ||||| || || || |||||
Sbjct 507 TGGAAGAAGACCTGATTCGCCGCGACCTGACCATCAACGCCATGGC 552
>seq3046662
Length=1096
Score = 93.3 bits (102), Expect = 4e-14
Identities = 198/292 (68%), Gaps = 8/292 (3%)
Strand=Plus/Plus
Query 108520 GTAGGTGGCGCAGTACGTGACGGTTTGCTGGGCCGTGAAGTCCACGACCGTGACTACGTG 108579
|| || || || || ||||| | |||| |||| | ||| ||| ||| |||
Sbjct 56 GTCGGCGGTGCGGTGCGTGATCGCCTGCTCGGCCTCAAGGTCACCGATATCGACCGCGTT 115
Query 108580 GTTGTGGGTGCAACACAC-GAACAAATGATTGAAAAAGGGTTCATCCAGGTTGGCGCTTC 108638
|| || ||||| || ||| ||||||||| | | ||||| | || | || ||||||
Sbjct 116 GTGGTCGGTGCGAC-CACTGAACAAATGCTCGCCAAAGGCTACAAGCCAGTCGGCGCTGA 174
Query 108639 CTTCCCGGTATACCTCCATCCGGAGACCAAGGAAGAATACGCGCTCGCTCGAACTGAACG 108698
||||||||||| ||| | || ||| | || |||||||| ||||| || || |||||
Sbjct 175 CTTCCCGGTATTCCTGGACCCCAAGAACGGCGACGAATACGCCCTCGCCCGCACCGAACG 234
Query 108699 TAAGGTTGGAAGCGGTCACAAAGGTTTTGAGACCTTT---TTCAGCCCTGATGTAACACT 108755
||| || | ||| || || |||| | ||| |||||| || || || ||
Sbjct 235 CAAGAGCGGTCGGGGTTACGGCGGCTTTGTG---TTTCACGCCAGCCCCGAGGTGACGCT 291
Query 108756 GGCAGAAGACCTGTCTCGTCGGGATCTGACTATTAATGCGATGGCTCAGGAT 108807
|| ||| |||||| ||| || || ||||| || || || ||||| |||||
Sbjct 292 GGAAGAGGACCTGATTCGCCGTGACCTGACCATCAACGCCATGGCCGAGGAT 343
>seq302243
Length=1145
Score = 93.3 bits (102), Expect = 4e-14
Identities = 195/288 (68%), Gaps = 2/288 (1%)
Strand=Plus/Plus
Query 108520 GTAGGTGGCGCAGTACGTGACGGTTTGCTGGGCCGTGAAGTCCACGACCGTGACTACGTG 108579
|| || ||||| || ||||| || |||| ||| || ||| |||| ||| ||||
Sbjct 56 GTCGGCGGCGCGGTGCGTGATCGTCTGCTCGGCATCGAGGTCACCGACATCGACCGCGTG 115
Query 108580 GTTGTGGGTGCAACACAC-GAACAAATGATTGAAAAAGGGTTCATCCAGGTTGGCGCTTC 108638
|| || || ||||| ||| ||| ||||| | | || || | || | ||| || |||
Sbjct 116 GTCGTCGGCGCAAC-CACTGAAGAAATGCTCGCCAAGGGCTACAAGCCGGTGGGTGCTGA 174
Query 108639 CTTCCCGGTATACCTCCATCCGGAGACCAAGGAAGAATACGCGCTCGCTCGAACTGAACG 108698
||||||||||| ||| ||| | | | || || ||||| || || || || || ||
Sbjct 175 CTTCCCGGTATTCCTGGCCCCGAAAAACGGCGATGAGTACGCCCTGGCCCGCACCGAGCG 234
Query 108699 TAAGGTTGGAAGCGGTCACAAAGGTTTTGAGACCTTTTTCAGCCCTGATGTAACACTGGC 108758
||| ||| | ||| | || |||| | | |||||| || || || ||||
Sbjct 235 CAAGAGTGGCCGGGGTTATGGCGGCTTTGTGTTTCATGCCAGCCCCGAGGTCACGCTGGA 294
Query 108759 AGAAGACCTGTCTCGTCGGGATCTGACTATTAATGCGATGGCTCAGGA 108806
|||||||||| |||||| || ||||| || || || ||||| ||||
Sbjct 295 AGAAGACCTGATTCGTCGCGACCTGACCATCAACGCCATGGCGGAGGA 342
>seq277625
Length=52836
Score = 86.0 bits (94), Expect = 6e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 64169 TTGGAGGAGAGTGGAGGAATCGAACCCCTACCGTTTCCAGCACCACAGGGTTCAAACCTG 64228
|||||||| | |||||| ||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 34747 TTGGAGGAAGGCGGAGGAGTCGAACCCCTACCGTTTCCAGCAGCACCGGGTTCAAACCGG 34806
Query 64229 CTTGTCCACC 64238
|||| | |||
Sbjct 34807 CTTGCCTACC 34816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448929284833440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |