Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq47025 138 9e-27
seq313959 134 1e-25
seq357474 113 3e-19
seq381307 100 2e-15
seq155098 98.7 8e-15
seq185925 89.7 4e-12
seq2709013 87.8 1e-11
seq300236 86.0 5e-11
>seq47025
Length=35021
Score = 138 bits (152), Expect = 9e-27
Identities = 327/483 (68%), Gaps = 12/483 (2%)
Strand=Plus/Minus
Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108
|| || ||||| |||||||||||||| | ||| |||| || ||| ||||| ||||
Sbjct 10141 AAGGTGGAAATAATTGCCAATGATCAGAGGAACTGAACCACCCCAAGCTATGTCACTTTT 10082
Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168
|| | || || || | ||||||| ||||| | |||| | | | ||||| |||
Sbjct 10081 ACTAATACCAAATGATTGATCAGTGATGCTGCAAAGAACCAAGTCCCAGTGAATCCCACC 10022
Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228
|| || |||||||||| |||| | |||||| |||| ||||||||| | ||| |||
Sbjct 10021 AACACAGTTTTTGATGCCAAACAACTTATTGGATGAAGATTTAATGATGCTGTTGTCCAG 9962
Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288
| |||||||| |||| ||| ||| | | |||| | |||| | |||| | || ||
Sbjct 9961 TCTGATATGAAACATTAGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTGAGGTTTAA 9902
Query 550289 GCTACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTT 550347
|| |||| | | ||| | |||| | ||||| | | ||||| | ||| |
Sbjct 9901 -ATAGAATACAAGGGACAGACAAAGAGTTTTTATCCAGAGGAGGTGTCATCCACGGTCCT 9843
Query 550348 AATGAAAATGAAACAAA-CAGCCAG-TGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGT 550404
| || | ||| ||| || ||| || | |||| |||| ||||| || ||
Sbjct 9842 GAAAAAGAGGAAGGAAATCA--CAGAAGCCTGCCTTGG-GAAGACTGTTACCAGCGCTGT 9786
Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464
| | ||||| || || ||||||||||| || | ||| |||| ||||||||||||
Sbjct 9785 TGTCATAGTACCTGCCTACTTTAATGACTCTCAGCATCAGACTACCAAAGATGCTGGAAC 9726
Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524
||||||| | || | ||| || || |||| |||| | ||||||||||| ||| ||
Sbjct 9725 TATTGCT-GCCTCAGTGTACT---TAGAATCAGTGAAACAACTGCTGCTGCTACTGCCTA 9670
Query 550525 TGG 550527
|||
Sbjct 9669 TGG 9667
>seq313959
Length=22831
Score = 134 bits (148), Expect = 1e-25
Identities = 258/374 (69%), Gaps = 10/374 (3%)
Strand=Plus/Plus
Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228
|| ||| | |||||||| |||||| | || || |||| ||||||||| | || ||
Sbjct 1746 AACACTGTCTTTGATGCCAAACGTCTGATCGGCAGAAAATTTAATGATCCTGTCGTGCAA 1805
Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATTG 550286
|||||||||| | ||||||||||||| | | || | || || || | || ||
Sbjct 1806 TCAGATATGAAACTTTGGCCTTTCCAAGTAATCAACGAAGGAGGCAAGCCCAAGGTAATG 1865
Query 550287 AAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344
| |||| | | ||| | ||| |||| || || |||| || ||||||||
Sbjct 1866 GTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAGGAAATCTCTTCTATGGT 1921
Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAG 550403
| | || ||||| | || || |||||| |||| | | | || || |||| |
Sbjct 1922 ACTGACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACTAATGCTG 1980
Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463
| || ||||| ||||| || || |||||||| || ||||| || || || ||||| ||
Sbjct 1981 TGATCACTGTGCCAGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAGGATGCAGGTG 2040
Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523
||| || || || ||||| || | |||||||||||||| ||||||||||| |||| |
Sbjct 2041 TTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCATTGCCT 2100
Query 550524 ATGGACTTGATAAA 550537
|||| | ||||||
Sbjct 2101 ATGGCTTAGATAAA 2114
>seq357474
Length=26394
Score = 113 bits (124), Expect = 3e-19
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| | || || | || ||||| || || || |||||||| || ||||| |||||
Sbjct 17046 GTTACCAACGCTGTTGTCACAGTACCTGCCTACTTCAATGACTCTCAGCGTCAGGCTACC 17105
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| ||||||||| || || || || || || |||||||| || ||||||
Sbjct 17106 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTGCGAATCATCAATGAGCCAACTGCT 17165
Query 550511 GCTGCACTTGCATATGG 550527
||||| |||| |||||
Sbjct 17166 GCTGCTATTGCCTATGG 17182
Score = 89.7 bits (98), Expect = 4e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
|| || ||| | || ||||| ||| |||||| ||||| | || | || || || |||
Sbjct 16226 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCACGGAAAGGTGGAA 16285
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| |||||||||||||| || ||| |||| || ||| ||||| | || || || ||
Sbjct 16286 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACC 16345
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177
|||| || | |||||||| ||||| | || | | | ||||| ||||| || ||
Sbjct 16346 GAACGATTGATCGGTGATGCTGCAAAGAACCAGGTCGCAATGAATCCCACCAACACGGTT 16405
Query 550178 TTTGATGCTAAACGTTTAATTGGAA 550202
|||| | || |||||||| ||
Sbjct 16406 TTTGGT----AAGCTTTAATTGTAA 16426
>seq381307
Length=16690
Score = 100 bits (110), Expect = 2e-15
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || ||
Sbjct 7153 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 7212
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503
|||||||||||| |||||||||||| ||||| | | || |||||||| ||
Sbjct 7213 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 7265
>seq155098
Length=7669
Score = 98.7 bits (108), Expect = 8e-15
Identities = 153/213 (72%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
|| |||||||| || ||| |||| ||| |||| |||| | ||| | | |||||
Sbjct 7229 ACTAGATGAAGAGTGGACTCCTTTTG--AATGCTGTAGTCAGACAAAGTACGTTCATCTT 7286
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| ||||| || || ||||| || ||| ||||||| ||||||||||||||||| ||||| |
Sbjct 7287 CCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 7346
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGT 563441
| || || ||||| || |||||||| || || | || |||||||| | ||
Sbjct 7347 GGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCG-AC-CTCGAGAGTGATGGT 7404
Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| || || || || || || ||||| |||||
Sbjct 7405 CTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437
>seq185925
Length=7279
Score = 89.7 bits (98), Expect = 4e-12
Identities = 151/213 (71%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
|| |||||||| || ||| |||| ||| ||||| |||| | ||| | |||||
Sbjct 308 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTATGTCCATCTT 365
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| ||||| || || ||| | || |||||||||| ||||||||||||||||| ||||| |
Sbjct 366 CCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 425
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGT 563441
| || || ||||| || |||||||| || || | || || ||||| | ||
Sbjct 426 GGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCG-AC-CTCAAGAGTGATGGT 483
Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| || || || || || | |||||| |||||
Sbjct 484 CTTCCCCGTCAGGGTCTTCATGAAAATCTGCAT 516
>seq2709013
Length=200
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/151 (74%), Gaps = 4/151 (3%)
Strand=Plus/Plus
Query 563266 ACAAGATGAAG--GGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
|| |||||||| || ||| |||| ||| ||||| |||| | ||| | | |||||
Sbjct 23 ACTAGATGAAGAGGGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCATCTT 80
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| ||||| || || |||| || ||||||||||| ||||||||||||||||| ||| | |
Sbjct 81 CCAGTTGCTTGCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTACCCT 140
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATC 563414
| || || ||||| || ||||||||
Sbjct 141 GGATCTTGGCCTTTACATTTTCTATTGTATC 171
>seq300236
Length=7644
Score = 86.0 bits (94), Expect = 5e-11
Identities = 156/224 (70%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311
||||| ||||| || || || || || ||| | | ||| || ||||| |||| || |
Sbjct 7634 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGG--ATGTTGTAGTCAGAAAGGG 7577
Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371
| | |||||| || ||||| || ||||| || | || ||||| || ||||| || |
Sbjct 7576 TGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGC 7517
Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCG 563430
| ||||| ||||| || || || || |||||| || ||| || | | || ||
Sbjct 7516 CCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGC-TCCACCTCC 7458
Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||||| | ||||||||||| || || || || || || |||||
Sbjct 7457 AGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 7414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3865961609135390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |