Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq47025 138 9e-27 seq313959 134 1e-25 seq357474 113 3e-19 seq381307 100 2e-15 seq155098 98.7 8e-15 seq185925 89.7 4e-12 seq2709013 87.8 1e-11 seq300236 86.0 5e-11 >seq47025 Length=35021 Score = 138 bits (152), Expect = 9e-27 Identities = 327/483 (68%), Gaps = 12/483 (2%) Strand=Plus/Minus Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 || || ||||| |||||||||||||| | ||| |||| || ||| ||||| |||| Sbjct 10141 AAGGTGGAAATAATTGCCAATGATCAGAGGAACTGAACCACCCCAAGCTATGTCACTTTT 10082 Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168 || | || || || | ||||||| ||||| | |||| | | | ||||| ||| Sbjct 10081 ACTAATACCAAATGATTGATCAGTGATGCTGCAAAGAACCAAGTCCCAGTGAATCCCACC 10022 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || |||||||||| |||| | |||||| |||| ||||||||| | ||| ||| Sbjct 10021 AACACAGTTTTTGATGCCAAACAACTTATTGGATGAAGATTTAATGATGCTGTTGTCCAG 9962 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | |||||||| |||| ||| ||| | | |||| | |||| | |||| | || || Sbjct 9961 TCTGATATGAAACATTAGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTGAGGTTTAA 9902 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTT 550347 || |||| | | ||| | |||| | ||||| | | ||||| | ||| | Sbjct 9901 -ATAGAATACAAGGGACAGACAAAGAGTTTTTATCCAGAGGAGGTGTCATCCACGGTCCT 9843 Query 550348 AATGAAAATGAAACAAA-CAGCCAG-TGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGT 550404 | || | ||| ||| || ||| || | |||| |||| ||||| || || Sbjct 9842 GAAAAAGAGGAAGGAAATCA--CAGAAGCCTGCCTTGG-GAAGACTGTTACCAGCGCTGT 9786 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 | | ||||| || || ||||||||||| || | ||| |||| |||||||||||| Sbjct 9785 TGTCATAGTACCTGCCTACTTTAATGACTCTCAGCATCAGACTACCAAAGATGCTGGAAC 9726 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 ||||||| | || | ||| || || |||| |||| | ||||||||||| ||| || Sbjct 9725 TATTGCT-GCCTCAGTGTACT---TAGAATCAGTGAAACAACTGCTGCTGCTACTGCCTA 9670 Query 550525 TGG 550527 ||| Sbjct 9669 TGG 9667 >seq313959 Length=22831 Score = 134 bits (148), Expect = 1e-25 Identities = 258/374 (69%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || ||| | |||||||| |||||| | || || |||| ||||||||| | || || Sbjct 1746 AACACTGTCTTTGATGCCAAACGTCTGATCGGCAGAAAATTTAATGATCCTGTCGTGCAA 1805 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATTG 550286 |||||||||| | ||||||||||||| | | || | || || || | || || Sbjct 1806 TCAGATATGAAACTTTGGCCTTTCCAAGTAATCAACGAAGGAGGCAAGCCCAAGGTAATG 1865 Query 550287 AAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 | |||| | | ||| | ||| |||| || || |||| || |||||||| Sbjct 1866 GTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAGGAAATCTCTTCTATGGT 1921 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAG 550403 | | || ||||| | || || |||||| |||| | | | || || |||| | Sbjct 1922 ACTGACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACTAATGCTG 1980 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || ||||| ||||| || || |||||||| || ||||| || || || ||||| || Sbjct 1981 TGATCACTGTGCCAGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAGGATGCAGGTG 2040 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 ||| || || || ||||| || | |||||||||||||| ||||||||||| |||| | Sbjct 2041 TTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCATTGCCT 2100 Query 550524 ATGGACTTGATAAA 550537 |||| | |||||| Sbjct 2101 ATGGCTTAGATAAA 2114 >seq357474 Length=26394 Score = 113 bits (124), Expect = 3e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || ||||| || || || |||||||| || ||||| ||||| Sbjct 17046 GTTACCAACGCTGTTGTCACAGTACCTGCCTACTTCAATGACTCTCAGCGTCAGGCTACC 17105 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || || || || || || |||||||| || |||||| Sbjct 17106 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTGCGAATCATCAATGAGCCAACTGCT 17165 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 17166 GCTGCTATTGCCTATGG 17182 Score = 89.7 bits (98), Expect = 4e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| |||||| ||||| | || | || || || ||| Sbjct 16226 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCACGGAAAGGTGGAA 16285 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||| | || || || || Sbjct 16286 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACC 16345 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| || | |||||||| ||||| | || | | | ||||| ||||| || || Sbjct 16346 GAACGATTGATCGGTGATGCTGCAAAGAACCAGGTCGCAATGAATCCCACCAACACGGTT 16405 Query 550178 TTTGATGCTAAACGTTTAATTGGAA 550202 |||| | || |||||||| || Sbjct 16406 TTTGGT----AAGCTTTAATTGTAA 16426 >seq381307 Length=16690 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || || Sbjct 7153 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 7212 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||||| ||||| | | || |||||||| || Sbjct 7213 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 7265 >seq155098 Length=7669 Score = 98.7 bits (108), Expect = 8e-15 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| |||| |||| | ||| | | ||||| Sbjct 7229 ACTAGATGAAGAGTGGACTCCTTTTG--AATGCTGTAGTCAGACAAAGTACGTTCATCTT 7286 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || ||||| || ||| ||||||| ||||||||||||||||| ||||| | Sbjct 7287 CCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 7346 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGT 563441 | || || ||||| || |||||||| || || | || |||||||| | || Sbjct 7347 GGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCG-AC-CTCGAGAGTGATGGT 7404 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || || || ||||| ||||| Sbjct 7405 CTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437 >seq185925 Length=7279 Score = 89.7 bits (98), Expect = 4e-12 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | ||||| Sbjct 308 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTATGTCCATCTT 365 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || ||| | || |||||||||| ||||||||||||||||| ||||| | Sbjct 366 CCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 425 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGT 563441 | || || ||||| || |||||||| || || | || || ||||| | || Sbjct 426 GGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCG-AC-CTCAAGAGTGATGGT 483 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || || | |||||| ||||| Sbjct 484 CTTCCCCGTCAGGGTCTTCATGAAAATCTGCAT 516 >seq2709013 Length=200 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 563266 ACAAGATGAAG--GGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | | ||||| Sbjct 23 ACTAGATGAAGAGGGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCATCTT 80 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || |||| || ||||||||||| ||||||||||||||||| ||| | | Sbjct 81 CCAGTTGCTTGCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTACCCT 140 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 | || || ||||| || |||||||| Sbjct 141 GGATCTTGGCCTTTACATTTTCTATTGTATC 171 >seq300236 Length=7644 Score = 86.0 bits (94), Expect = 5e-11 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||| ||||| || || || || || ||| | | ||| || ||||| |||| || | Sbjct 7634 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGG--ATGTTGTAGTCAGAAAGGG 7577 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || ||||| || ||||| || | || ||||| || ||||| || | Sbjct 7576 TGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGC 7517 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCG 563430 | ||||| ||||| || || || || |||||| || ||| || | | || || Sbjct 7516 CCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGC-TCCACCTCC 7458 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | ||||||||||| || || || || || || ||||| Sbjct 7457 AGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 7414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3865961609135390