Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq295506 113 1e-20 seq3088451 87.8 5e-13 >seq295506 Length=3618 Score = 113 bits (124), Expect = 1e-20 Identities = 347/529 (66%), Gaps = 6/529 (1%) Strand=Plus/Minus Query 58 AACCGGACTGGGAGGCCATCGAGACG-GCGTACCGGGCCGGAGTGATGTCCCTCCGAGAA 116 |||| ||||||||||| ||||| ||| || ||||||||||| || | || | || || Sbjct 2292 AACCCGACTGGGAGGCAATCGA-ACGTGCCTACCGGGCCGGTCTGCTTTCTATTCGTGAG 2234 Query 117 ATAGCGTCACAGCACGGTATCAGTGAAGGCGCTATCCGTAAGCGTGCCAAGCGCGACGAC 176 || || ||| || || |||| | | || || ||| ||||| |||||||| |||| Sbjct 2233 ATCGCATCAACCCAAGGCATCACTCACGGAGCAATCAACAAGCGCGCCAAGCGGGACGGA 2174 Query 177 TGGTCGCGTGACCTCAATGCGAAGATTCAGCAAAAGGCTGATGATCTGGTACGCAAACAG 236 ||| ||| |||||||| |||||||| ||| ||||||||| |||||| ||||| Sbjct 2173 TGGGAGCGAGACCTCAAGGCGAAGATCCAGGCTAAGGCTGATTCGCTGGTATCCAAACGC 2114 Query 237 GAGGTACGCAAGCNGGTACGCAACGAAAGCACTTTGACCGAGCGCGTACTGATAGAGGCG 296 |||| || |||| || | || | ||||| | | | ||||||| Sbjct 2113 ACGGTATCCACTGAGGTATCCACCAAACAGGCGGATACCGAAAGAGAGATCATAGAGGTA 2054 Query 297 ACTGCCGAGGTAATTGCCACGGTACGCATGGAGCACCGGGGAGACATC-CGCCGGGCTCG 355 | || ||||| || |||| || || |||| ||||| || || ||| ||| ||| || Sbjct 2053 AACGCTGAGGTCATCGCCAATGTGCGGATGGCTCACCGTGGCGATATCTCGCGCGGC-CG 1995 Query 356 TGAATTGACCAACACGCTATTCGATGAACTTGGTGCGCAGTGCG-CAGATGTAAGCGCGC 414 | ||||||| ||| | || ||||| | | | | | || | || | Sbjct 1994 GCGGCTCACCAACAAGCTGCTGGACGAACTGGAAGGCCTGACTGACAACCGGGAG-TTGT 1936 Query 415 TCGAGCAGTTGGGCGACATCATGTTTGATCCCGACGATAAAGGCCGGGACCGGCTCAATG 474 |||| || |||||||| | ||| || || || || || ||| || || ||| | Sbjct 1935 TCGATCAATTGGGCGAGCTGATGCACGACCCGGATGACAACGGCTTCGATAAGCGCAACG 1876 Query 475 AAATTTATCAGAAAGTGATCAGCCTGCCTTCCCGCGTTAAATCCATGAAAGACCTGAGCG 534 || | ||| || |||||||||||||| |||| || | ||||| || || | Sbjct 1875 AACTGTATGGCAAGGTGATCAGCCTGCCGGGCCGCTCCAAGACGATGAAGGAAATGGCGG 1816 Query 535 ACAGCCTGAAGACGCTGATCGGCCTCGAGCGTGAGGCATACAGCATCGA 583 | | |||||||| |||||| || ||||| | || ||| | |||| Sbjct 1815 AGACGCTGAAGACTCTGATCTCGCTGGAGCGCCAAGCCTACGACCTCGA 1767 >seq3088451 Length=13260 Score = 87.8 bits (96), Expect = 5e-13 Identities = 218/326 (67%), Gaps = 14/326 (4%) Strand=Plus/Plus Query 19931 AATTACGATCCGATAGCCCGAACCTATAGCGGCACATGGGACGGGACATTTAAGTGGGGC 19990 || ||||||||| | ||||| ||||| |||| | |||||||| || | || || | Sbjct 11955 AACTACGATCCGGTGGCCCGCACCTACTCCGGCGCCTGGGACGGCACCATGAAAGAGGCC 12014 Query 19991 TGGACGAATAACCCAGCGTGGATCTGGTTCG--ATGTGCTCACTGAGCCGCGTTTCGGAC 20048 ||||| |||||||| || |||||| | || || ||| | | || | ||||| || | Sbjct 12015 TGGACCAATAACCCGGCCTGGATCACCTACGGCATCTGCACCCA-AGAC-CGTTTTGGTC 12072 Query 20049 TTGGCCGCCGTGTGACGCCAGAAATGCTCGATAAATGGGAGCTTTATCGCATAGCGCAGC 20108 | |||||||| | | ||| ||| | || || ||||||||||| || || || ||| Sbjct 12073 TGGGCCGCCGCATCAAGCCGTGGATGGTGGACAAGTGGGAGCTTTACCGAATCGCACAGT 12132 Query 20109 GCTGTGATCAGCTTGTACCAGATGGAAAAGGCGGTAGCGGTACAGAGCCGCGCTTCATGT 20168 || || ||| | ||| | || || | ||| |||||| |||||| ||| Sbjct 12133 ATTGCGACCAGTTGGTATC------GAACGGTGCCGACGGAGTAGAGCCTCGCTTCCTGT 12186 Query 20169 TTGACGTGTACATTCAGGCGCAGGCCGACGCCTGGCAGGTGATCAAGGATATCGCCGCAG 20228 |||| || || | |||| |||| || || ||| || | || ||||||| | Sbjct 12187 GTGACATGAACCTGCAGGGCAAGGCAGATGCATGGTCATTGCTGCGCGACATCGCCG--G 12244 Query 20229 GCTTTAAC--GGCATGACGTTCTGGG 20252 |||| | |||||||| | ||||| Sbjct 12245 TATTTACCGGGGCATGACTTACTGGG 12270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152707650999116