Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_016158.1
Length=49576
Score E
Sequences producing significant alignments: (Bits) Value
seq295506 113 1e-20
seq3088451 87.8 5e-13
>seq295506
Length=3618
Score = 113 bits (124), Expect = 1e-20
Identities = 347/529 (66%), Gaps = 6/529 (1%)
Strand=Plus/Minus
Query 58 AACCGGACTGGGAGGCCATCGAGACG-GCGTACCGGGCCGGAGTGATGTCCCTCCGAGAA 116
|||| ||||||||||| ||||| ||| || ||||||||||| || | || | || ||
Sbjct 2292 AACCCGACTGGGAGGCAATCGA-ACGTGCCTACCGGGCCGGTCTGCTTTCTATTCGTGAG 2234
Query 117 ATAGCGTCACAGCACGGTATCAGTGAAGGCGCTATCCGTAAGCGTGCCAAGCGCGACGAC 176
|| || ||| || || |||| | | || || ||| ||||| |||||||| ||||
Sbjct 2233 ATCGCATCAACCCAAGGCATCACTCACGGAGCAATCAACAAGCGCGCCAAGCGGGACGGA 2174
Query 177 TGGTCGCGTGACCTCAATGCGAAGATTCAGCAAAAGGCTGATGATCTGGTACGCAAACAG 236
||| ||| |||||||| |||||||| ||| ||||||||| |||||| |||||
Sbjct 2173 TGGGAGCGAGACCTCAAGGCGAAGATCCAGGCTAAGGCTGATTCGCTGGTATCCAAACGC 2114
Query 237 GAGGTACGCAAGCNGGTACGCAACGAAAGCACTTTGACCGAGCGCGTACTGATAGAGGCG 296
|||| || |||| || | || | ||||| | | | |||||||
Sbjct 2113 ACGGTATCCACTGAGGTATCCACCAAACAGGCGGATACCGAAAGAGAGATCATAGAGGTA 2054
Query 297 ACTGCCGAGGTAATTGCCACGGTACGCATGGAGCACCGGGGAGACATC-CGCCGGGCTCG 355
| || ||||| || |||| || || |||| ||||| || || ||| ||| ||| ||
Sbjct 2053 AACGCTGAGGTCATCGCCAATGTGCGGATGGCTCACCGTGGCGATATCTCGCGCGGC-CG 1995
Query 356 TGAATTGACCAACACGCTATTCGATGAACTTGGTGCGCAGTGCG-CAGATGTAAGCGCGC 414
| ||||||| ||| | || ||||| | | | | | || | || |
Sbjct 1994 GCGGCTCACCAACAAGCTGCTGGACGAACTGGAAGGCCTGACTGACAACCGGGAG-TTGT 1936
Query 415 TCGAGCAGTTGGGCGACATCATGTTTGATCCCGACGATAAAGGCCGGGACCGGCTCAATG 474
|||| || |||||||| | ||| || || || || || ||| || || ||| |
Sbjct 1935 TCGATCAATTGGGCGAGCTGATGCACGACCCGGATGACAACGGCTTCGATAAGCGCAACG 1876
Query 475 AAATTTATCAGAAAGTGATCAGCCTGCCTTCCCGCGTTAAATCCATGAAAGACCTGAGCG 534
|| | ||| || |||||||||||||| |||| || | ||||| || || |
Sbjct 1875 AACTGTATGGCAAGGTGATCAGCCTGCCGGGCCGCTCCAAGACGATGAAGGAAATGGCGG 1816
Query 535 ACAGCCTGAAGACGCTGATCGGCCTCGAGCGTGAGGCATACAGCATCGA 583
| | |||||||| |||||| || ||||| | || ||| | ||||
Sbjct 1815 AGACGCTGAAGACTCTGATCTCGCTGGAGCGCCAAGCCTACGACCTCGA 1767
>seq3088451
Length=13260
Score = 87.8 bits (96), Expect = 5e-13
Identities = 218/326 (67%), Gaps = 14/326 (4%)
Strand=Plus/Plus
Query 19931 AATTACGATCCGATAGCCCGAACCTATAGCGGCACATGGGACGGGACATTTAAGTGGGGC 19990
|| ||||||||| | ||||| ||||| |||| | |||||||| || | || || |
Sbjct 11955 AACTACGATCCGGTGGCCCGCACCTACTCCGGCGCCTGGGACGGCACCATGAAAGAGGCC 12014
Query 19991 TGGACGAATAACCCAGCGTGGATCTGGTTCG--ATGTGCTCACTGAGCCGCGTTTCGGAC 20048
||||| |||||||| || |||||| | || || ||| | | || | ||||| || |
Sbjct 12015 TGGACCAATAACCCGGCCTGGATCACCTACGGCATCTGCACCCA-AGAC-CGTTTTGGTC 12072
Query 20049 TTGGCCGCCGTGTGACGCCAGAAATGCTCGATAAATGGGAGCTTTATCGCATAGCGCAGC 20108
| |||||||| | | ||| ||| | || || ||||||||||| || || || |||
Sbjct 12073 TGGGCCGCCGCATCAAGCCGTGGATGGTGGACAAGTGGGAGCTTTACCGAATCGCACAGT 12132
Query 20109 GCTGTGATCAGCTTGTACCAGATGGAAAAGGCGGTAGCGGTACAGAGCCGCGCTTCATGT 20168
|| || ||| | ||| | || || | ||| |||||| |||||| |||
Sbjct 12133 ATTGCGACCAGTTGGTATC------GAACGGTGCCGACGGAGTAGAGCCTCGCTTCCTGT 12186
Query 20169 TTGACGTGTACATTCAGGCGCAGGCCGACGCCTGGCAGGTGATCAAGGATATCGCCGCAG 20228
|||| || || | |||| |||| || || ||| || | || ||||||| |
Sbjct 12187 GTGACATGAACCTGCAGGGCAAGGCAGATGCATGGTCATTGCTGCGCGACATCGCCG--G 12244
Query 20229 GCTTTAAC--GGCATGACGTTCTGGG 20252
|||| | |||||||| | |||||
Sbjct 12245 TATTTACCGGGGCATGACTTACTGGG 12270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152707650999116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |