Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_016566.1 Length=44077 Score E Sequences producing significant alignments: (Bits) Value seq3088451 98.7 3e-16 >seq3088451 Length=13260 Score = 98.7 bits (108), Expect = 3e-16 Identities = 212/317 (67%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 18515 ATCGACGCCCGCCTGCGATACCCGCTAACCGCGCTGTTGTTCGTGGAGTTCGACGCTAAG 18574 |||||||| ||||| ||||| ||||||||| ||||||| ||||||||||| || Sbjct 11832 ATCGACGCAAAGCTGCGCTACCCAAACACCGCGCTGCTGTTCGTCGAGTTCGACGCCGAG 11891 Query 18575 GCTTTCCAGAATATCCCGCGCGTGTCAATCAAGTGCAAAGGTCGCAAGGTGTTGGTCCCG 18634 ||| ||| || ||| |||| | | ||||| || | ||| | | ||| ||| Sbjct 11892 CAGTTCACGAACATTCCGGCCGTGACCGTGAAGTGTAAGGCGCGCCGGTGGCAGGTGCCG 11951 Query 18635 AACAACTACGACCCGATTAATCACACCTATTCGGGGGACTGGGATGGCACGTTTAAACGC 18694 | ||||||||| ||| | | |||||| || || | |||||| ||||| | ||| Sbjct 11952 AGCAACTACGATCCGGTGGCCCGCACCTACTCCGGCGCCTGGGACGGCACCATGAAAGAG 12011 Query 18695 GCATGGACGGATAACCCTGCGTGGCACTGGTACGATATTTGTATTACTGAGCGCTTTGGC 18754 || ||||| ||||||| || ||| | |||| || || | || || ||||| Sbjct 12012 GCCTGGACCAATAACCCGGCCTGGATCACCTACGGCATCTGCACCCAAGACCGTTTTGGT 12071 Query 18755 CTCGGTCGTCGTATCAAACCGCAAATGCTAAACCGATACGCGCTTTACCAGGTTGCGCAG 18814 || || || || ||||| ||| ||| | || | | |||||||| | || ||| Sbjct 12072 CTGGGCCGCCGCATCAAGCCGTGGATGGTGGACAAGTGGGAGCTTTACCGAATCGCACAG 12131 Query 18815 CGCTGCGATCAGCTGGT 18831 ||||| ||| |||| Sbjct 12132 TATTGCGACCAGTTGGT 12148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135756232434698