Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_016566.1
Length=44077
Score E
Sequences producing significant alignments: (Bits) Value
seq3088451 98.7 3e-16
>seq3088451
Length=13260
Score = 98.7 bits (108), Expect = 3e-16
Identities = 212/317 (67%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 18515 ATCGACGCCCGCCTGCGATACCCGCTAACCGCGCTGTTGTTCGTGGAGTTCGACGCTAAG 18574
|||||||| ||||| ||||| ||||||||| ||||||| ||||||||||| ||
Sbjct 11832 ATCGACGCAAAGCTGCGCTACCCAAACACCGCGCTGCTGTTCGTCGAGTTCGACGCCGAG 11891
Query 18575 GCTTTCCAGAATATCCCGCGCGTGTCAATCAAGTGCAAAGGTCGCAAGGTGTTGGTCCCG 18634
||| ||| || ||| |||| | | ||||| || | ||| | | ||| |||
Sbjct 11892 CAGTTCACGAACATTCCGGCCGTGACCGTGAAGTGTAAGGCGCGCCGGTGGCAGGTGCCG 11951
Query 18635 AACAACTACGACCCGATTAATCACACCTATTCGGGGGACTGGGATGGCACGTTTAAACGC 18694
| ||||||||| ||| | | |||||| || || | |||||| ||||| | |||
Sbjct 11952 AGCAACTACGATCCGGTGGCCCGCACCTACTCCGGCGCCTGGGACGGCACCATGAAAGAG 12011
Query 18695 GCATGGACGGATAACCCTGCGTGGCACTGGTACGATATTTGTATTACTGAGCGCTTTGGC 18754
|| ||||| ||||||| || ||| | |||| || || | || || |||||
Sbjct 12012 GCCTGGACCAATAACCCGGCCTGGATCACCTACGGCATCTGCACCCAAGACCGTTTTGGT 12071
Query 18755 CTCGGTCGTCGTATCAAACCGCAAATGCTAAACCGATACGCGCTTTACCAGGTTGCGCAG 18814
|| || || || ||||| ||| ||| | || | | |||||||| | || |||
Sbjct 12072 CTGGGCCGCCGCATCAAGCCGTGGATGGTGGACAAGTGGGAGCTTTACCGAATCGCACAG 12131
Query 18815 CGCTGCGATCAGCTGGT 18831
||||| ||| ||||
Sbjct 12132 TATTGCGACCAGTTGGT 12148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 135756232434698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |