Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq3047186 203 1e-47 seq3023355 196 1e-45 seq2815396 183 9e-42 seq366846 183 9e-42 seq3087479 132 1e-26 seq2453999 127 6e-25 seq2262318 107 6e-19 seq3088492 105 2e-18 seq3087968 100 9e-17 seq3087082 86.0 2e-12 seq3066367 86.0 2e-12 seq322084 86.0 2e-12 seq2686037 84.2 7e-12 seq2645378 84.2 7e-12 seq1087588 84.2 7e-12 seq221954 84.2 7e-12 seq3083733 82.4 2e-11 seq3000360 80.6 8e-11 >seq3047186 Length=1103 Score = 203 bits (224), Expect = 1e-47 Identities = 226/298 (76%), Gaps = 9/298 (3%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | |||||| |||||||||||||||||||| || || || |||||||| || Sbjct 736 CCCGGTGGTGGCGCTGTCCCAGCTCAACCGCTCCCTGGAACAACGCCCCAACAAGCGCCC 795 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 | ||| || ||| |||| || ||||| |||||||||||||||||||| ||||||||||| Sbjct 796 GGTGAACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAGGACGCCGACGTGATCATGTT 855 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 |||||||||||||||||| || ||||| || || | || ||| | || ||| | || Sbjct 856 CGTGTACCGCGACGAGGTGTATCACCCCGAAACGGAACACAAGGGCATTGCCGAGATCAT 915 Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAA---GCACTGTTCGGTGCGCGTTCCTGGGTAA 21549 ||||| ||||| || ||||| ||| | || | | || |||||| | || || Sbjct 916 CATCGGCAAGCAGCGGAACGG---GCCTATCGGCTTTATCCGCCTGGCGTTCATCGGCAA 972 Query 21550 GTACTCGCGATTCGAGCAGCTCGCTCCGGGCGCGCTGGACGAGTTCGATTTCGACGAG 21607 |||| |||| ||||| | ||||| |||||| ||| || | ||||| ||||||| Sbjct 973 GTACACGCGCTTCGAAAACCTCGCGCCGGGC-AGCT--ACAACTTCGACGACGACGAG 1027 >seq3023355 Length=832 Score = 196 bits (216), Expect = 1e-45 Identities = 164/201 (82%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | |||||| ||||||||||| ||||||||||| |||||||||||||| || Sbjct 616 CCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAGCAACGGCCGAACAAGCGCCC 675 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 | ||| || ||| |||| || ||||| |||||||||||||| ||||| ||||||||||| Sbjct 676 GGTGAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCCGACGTGATCATGTT 735 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 |||||||||||||||||| || ||||| || || || || ||| | || ||| | || Sbjct 736 CGTGTACCGCGACGAGGTGTATCACCCCGAGACGGAGCACAAAGGCATTGCCGAGATCAT 795 Query 21493 CATCGCGAAGCACCGCAACGG 21513 ||||| ||||| || ||||| Sbjct 796 CATCGGCAAGCAGCGGAACGG 816 >seq2815396 Length=244 Score = 183 bits (202), Expect = 9e-42 Identities = 161/201 (80%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | |||||||||||||||||| |||||||| ||||| || |||||||| || Sbjct 223 CCCGGTGGTGGCGCTGTCGCAGCTCAACCGTTCCCTGGAACAGCGTCCCAACAAGCGCCC 164 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 | ||| || ||||||||||| ||||| |||||||||||||| || || ||||||||||| Sbjct 163 GGTGAACTCCGACCTGCGCGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTT 104 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 |||||||| |||||||| |||||||| || || | | ||| | || ||| | || Sbjct 103 TGTGTACCGGGACGAGGTGTACCACCCCGAAACGGAACATAAAGGCATTGCCGAGATCAT 44 Query 21493 CATCGCGAAGCACCGCAACGG 21513 ||||| ||||| || ||||| Sbjct 43 CATCGGCAAGCAGCGGAACGG 23 >seq366846 Length=1509 Score = 183 bits (202), Expect = 9e-42 Identities = 204/271 (75%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | |||||| ||||||||||| |||||||| || || ||||||||||| || Sbjct 460 CCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAACAACGCCCGAACAAGCGCCC 401 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 | ||| || ||| |||| || ||||| |||||||||||||| || || ||||||||||| Sbjct 400 GGTGAACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTT 341 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 |||||||||||||||||| || ||||| || || | || ||| | || || | || Sbjct 340 CGTGTACCGCGACGAGGTGTATCACCCCGAGACGGAACACAAAGGCATTGCCGAAATCAT 281 Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAA---GCACTGTTCGGTGCGCGTTCCTGGGTAA 21549 ||||| ||||| || ||||| |||| || | | || ||||| | ||||| Sbjct 280 CATCGGCAAGCAGCGGAACGG---ACCAATTGGCTTTATCCGCCTGGCGTTTATCGGTAA 224 Query 21550 GTACTCGCGATTCGAGCAGCTCGCTCCGGGC 21580 |||| |||| ||||| | || || |||||| Sbjct 223 GTACACGCGCTTCGAAAACCTGGCGCCGGGC 193 >seq3087479 Length=5222 Score = 132 bits (146), Expect = 1e-26 Identities = 212/302 (70%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 17466 CTGGGTAAGGTCCGCGTGCTTGCGGGCTAGCTTGATTCGGTCTTTGAGTGCGCTCATCCG 17525 |||||| || | |||||||| || ||| || | ||| ||| |||| |||||| | Sbjct 446 CTGGGTCAGATTGGCGTGCTTTCGCGCTTCTTTTAGTCGTTCTGCAAGTGTGCTCATGCA 387 Query 17526 GGGCAATCTATAAGCGCCCTTATGGACTTGCAAATAAGCCTCCTTATTAATAGGATATAA 17585 ||| |||||| ||||||| | ||||||||||||||| ||| | |||||||||| Sbjct 386 CATGAATTTATAAGTTCCCTTATTGGCTTGCAAATAAGCCTACTTCTACTTAGGATATAA 327 Query 17586 GTGTGCTTATCTAGAAGGTCCATAGAAATGACCCCCATCGAAAAGCTTGTTTCTTACTTC 17645 | ||||||| || ||| | | | |||||||| ||||||| ||| || | |||| Sbjct 326 GCAGGCTTATC-AGGAGGGCTCT-CATATGACCCCTATCGAAAGGCTCGTCGACTTCTTC 269 Query 17646 GGCGACCAGACGAAGACGGCCAAGGCCTTGGGGGTTTCCCAGGCTGCGGTTTCGTACTGG 17705 |||| || || || || || || | | || ||||| || || |||||||||||| Sbjct 268 GGCGGGCAAACCAAAACCGCTTCAGCGCTCGACGTATCCCAAGCAGCAGTTTCGTACTGG 209 Query 17706 CTGGCGGGTATCTACGTAATGCGCGCCGATCTGGCCTTCAAAGCAGAAGAGCTGACTGGT 17765 | || || || || ||||| || || || ||||| || |||||| |||| ||| Sbjct 208 GTCGCCGGGATTCACCCGATGCGTGCAGAAAAAGCTTTCAAGGCTGAAGAGTTGACGGGT 149 Query 17766 GG 17767 || Sbjct 148 GG 147 >seq2453999 Length=160 Score = 127 bits (140), Expect = 6e-25 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 21371 CCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATG 21430 ||| ||| || ||| |||| || ||||| |||||||||||||| || || ||||||||| Sbjct 2 CCGGTGAACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATG 61 Query 21431 TTCGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTG 21490 || ||||||||||||||||| |||||||| || ||| || || ||| | || ||| | Sbjct 62 TTTGTGTACCGCGACGAGGTGTACCACCCCGAGACCGAGCACAAAGGCATTGCCGAGATC 121 Query 21491 ATCATCGCGAAGCACCGCAACGG 21513 ||||||| ||||| || ||||| Sbjct 122 ATCATCGGCAAGCAGCGGAACGG 144 >seq2262318 Length=133 Score = 107 bits (118), Expect = 6e-19 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | |||||||||||||||||| |||||||| || || || |||||||| || Sbjct 22 CCCGGTGGTGGCGCTGTCGCAGCTCAACCGTTCCCTGGAACAACGTCCCAACAAGCGCCC 81 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTG 21424 | ||| || ||| |||| || ||||| |||||||||||||| || || ||| Sbjct 82 GGTGAACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAGGATGCTGACGTG 133 >seq3088492 Length=18035 Score = 105 bits (116), Expect = 2e-18 Identities = 260/389 (67%), Gaps = 8/389 (2%) Strand=Plus/Minus Query 16713 CAGGACCTTGGCCTGGAAATGG-ACGTCCTCCATTCGGGCCTTCTGCGGCTCGAAGGACT 16771 ||| |||||||| || || || ||||| || | ||| || |||| |||| || || Sbjct 7047 CAGCACCTTGGCATG-AATTGTCACGTCATCGACTCGCGCAGTCTGATTCTCGTAGTGCT 6989 Query 16772 TGTTGTCCGACACCAGCAGGTAGTGCTCGGCATCGTGGATCTGCACCCGCTTCACGAACA 16831 |||||| || | |||| | ||||||||| | || || | | |||||| | | | | Sbjct 6988 GGTTGTCTGAAATCAGCCGATAGTGCTCGTCGTCCAGGCGCATGATCCGCTTGATGTAGA 6929 Query 16832 GGTGCTGCAGCCAGGTGAAGACGTAGACGCCTTCCTCGACGAAGTCGGTAATGCCCATGT 16891 | | ||| ||||||||| ||||| | ||| || ||| ||| || | || ||| | Sbjct 6928 GCTCCTGGTGCCAGGTGACAACGTATATGCCCTCACCGATGAACTCATTTATCCCCCGAT 6869 Query 16892 CGACGAGGATCGGGGACTTGTCCTCGATGGTGCCCAGCATGCTCTGGCCCCACCCAGTGA 16951 | |||| | | | || || | ||| ||||| ||||||||||||||| || || | Sbjct 6868 CCACGATCACCAAGTCTTTATCATTGATCGTGCCTTCCATGCTCTGGCCCCAGCCGGTAA 6809 Query 16952 TGATCTTGAG-GTTGGCCGGATCG--GTGTACTTCAGGCCGAGATCATCCAGTTGGACCT 17008 | ||| || | || | ||| | ||| ||| ||| || ||| ||| Sbjct 6808 TCATCGCCAGCGCTG---AGGTCGACGAGTAGGTCACGCCTTTCTCTCTCAGCATTTCCT 6752 Query 17009 TGTCGACGACCAGATTCCTGACGAACTCGCGGTACTCGGCCGGCACCTGGCCGCCGCCCA 17068 |||||||| |||| ||| |||| || ||||| || ||||||||| ||||| Sbjct 6751 CACGAACGACCAGGTTCCGGACAGCCTCGTTATAGTCGGCAGGTACCTGGCCGTGGCCCA 6692 Query 17069 TGGCAGCGCGCACGTCGTACTGGGCGATC 17097 |||| ||||||| |||||||| | |||| Sbjct 6691 TGGCGCCGCGCACATCGTACTGAGGGATC 6663 >seq3087968 Length=6546 Score = 100 bits (110), Expect = 9e-17 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 3381 TCCAGCCTGGCGCCCTTCGAGTCCATCCAGCCGGGCAGCAGAGCGATTGCCTGGCAGGTG 3440 || || | |||||| | ||| | |||| |||||||||| ||||| | |||| | Sbjct 1356 TCAAGGCGGGCGCCTTGCGACTTTTCCCAGTCGGGCAGCAGGGCGATCACGCCGCAGAGG 1297 Query 3441 AGCAGCTTCTGCAGGTCG-AGCCGCAGGTAGTCGGCCCACTCGAAGCCCGGAATCTCGCC 3499 ||| ||||||| || | || |||||||||||||| | |||| | |||| Sbjct 1296 CCCAGGCGGGTCAGGTCGTAGGC-CATGTAGTCGGCCCACTGGGCGCCCTCGACGACGCC 1238 Query 3500 GTGCTCGGCGGGGTTCTCGACCTGGTACCCGAGGCCTCGCAGGCGCGCGGCTTCGGCGTG 3559 ||| || |||||||||||||| | ||| || ||| | ||||| | |||| |||||| Sbjct 1237 GTGGTCTGCGGGGTTCTCGACTTCGTAGCCCAGGGCGCGCAGCTGGTCGGCCACGGCGTT 1178 Query 3560 GAACGCGGGGAAGTTGTGTTCGGGCAGGCCAGTCATGGGGCCTGCGAGGTAGATGCGCTG 3619 ||| |||||| ||||| || | ||| ||||| || || || | ||||| ||| || Sbjct 1177 GAAGGCGGGGTAGTTGAAGTCCTCGATGCCCGTCATCGGCCCGGCCACGTAGACGCGGTG 1118 Query 3620 GG 3621 || Sbjct 1117 GG 1116 >seq3087082 Length=4623 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 45094 GCCATGCCCATCACTGAGCAGCAACTGCTGCGAATTCTCCCGAACGCCGGCCCTCGAGCC 45153 || |||||||||||||||||||| |||||| || |||||||||||||||| | |||| Sbjct 3797 GCTATGCCCATCACTGAGCAGCAGTTGCTGCAGATCCTCCCGAACGCCGGCCGCCAAGCC 3856 Query 45154 GGCGTTTTTGTT 45165 |||||||| ||| Sbjct 3857 GGCGTTTTCGTT 3868 >seq3066367 Length=1492 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 9633 TCGCGCTCGCCGTTGGAGTTCGGTGCCGATACGACCCCGGCCGCCTCCATCGCTTCAACG 9692 |||||| |||||||| |||| ||| | ||||| ||||| |||||| ||||| | Sbjct 455 TCGCGCGAGCCGTTGGTGTTCATTGCGGTGACGACGCCGGCGTGCTCCATGGCTTCGATC 514 Query 9693 ATGCGCGCGGCACGGTTGTAGCCGATCTTCAG 9724 ||||| ||||| |||||||||||||||||||| Sbjct 515 ATGCGGGCGGCGCGGTTGTAGCCGATCTTCAG 546 >seq322084 Length=21621 Score = 86.0 bits (94), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45096 CATGCCCATCACTGAGCAGCAACTGCTGCGAATTCTCCCGAACGCCGGCCCTCGAGCCGG 45155 |||||| ||||| |||||| ||||||||| || |||||||||||||||| | |||||| Sbjct 12999 CATGCCGATCACCGAGCAGAAACTGCTGCAGATCCTCCCGAACGCCGGCCGCCAAGCCGG 13058 Query 45156 CGTTTTTGTT 45165 |||||||||| Sbjct 13059 CGTTTTTGTT 13068 >seq2686037 Length=194 Score = 84.2 bits (92), Expect = 7e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 191 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 133 >seq2645378 Length=187 Score = 84.2 bits (92), Expect = 7e-12 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 47539 GGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 2 GGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 57 >seq1087588 Length=116 Score = 84.2 bits (92), Expect = 7e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 60 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 2 >seq221954 Length=357 Score = 84.2 bits (92), Expect = 7e-12 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 47539 GGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 356 GGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 301 >seq3083733 Length=2771 Score = 82.4 bits (90), Expect = 2e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45096 CATGCCCATCACTGAGCAGCAACTGCTGCGAATTCTCCCGAACGCCGGCCCTCGAGCCGG 45155 |||||| ||||| |||||||| |||||| || |||||||||||||||| | |||||| Sbjct 2686 CATGCCGATCACCGAGCAGCAGTTGCTGCAGATCCTCCCGAACGCCGGCCGCCAAGCCGG 2745 Query 45156 CGTTTTTGTT 45165 |||||||||| Sbjct 2746 CGTTTTTGTT 2755 >seq3000360 Length=665 Score = 80.6 bits (88), Expect = 8e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 45094 GCCATGCCCATCACTGAGCAGCAACTGCTGCGAATTCTCCCGAACGCCGGCCCTCGAGCC 45153 || |||||||||||||||||||| ||||||| || |||| |||||||||| | |||| Sbjct 208 GCTATGCCCATCACTGAGCAGCAGTTGCTGCGGATCATCCCTAACGCCGGCCGCCAAGCC 149 Query 45154 GGCGTTTTTGTT 45165 |||||||| ||| Sbjct 148 GGCGTTTTCGTT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151348208266454