Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq142543 102 9e-17
seq2306809 87.8 2e-12
seq2658871 82.4 9e-11
>seq142543
Length=7870
Score = 102 bits (112), Expect = 9e-17
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | ||||| ||||| || | ||| ||||| | |||||||| |
Sbjct 6767 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCT 6826
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| |
Sbjct 6827 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 6886
Query 37318 CTAC 37321
| ||
Sbjct 6887 CCAC 6890
>seq2306809
Length=138
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/125 (77%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 37488 TTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTT 37546
||||| || || || || || ||||| ||||| | ||||| | |||| ||||| || |
Sbjct 3 TTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGG-TAATCTGAACTTCTTG 61
Query 37547 AAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAG 37606
|||||| || | || |||||||| ||||| |||||||| |||||||||||||| ||
Sbjct 62 GCAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 121
Query 37607 AACAT 37611
||||
Sbjct 122 CACAT 126
>seq2658871
Length=189
Score = 82.4 bits (90), Expect = 9e-11
Identities = 76/94 (81%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||||| || || |||| |||| || || || || ||||| || |
Sbjct 87 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCCT 145
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
| ||||| |||||||||||||| |||||||||||
Sbjct 146 CCAGTGAAATATTTTCCATAAAGTCAAATGGATT 179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569449588096440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |