Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2585192 132 4e-26 seq116363 127 2e-24 seq1495313 102 6e-17 seq118786 87.8 1e-12 >seq2585192 Length=178 Score = 132 bits (146), Expect = 4e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 29875 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 29934 |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || || Sbjct 11 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 70 Query 29935 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994 || |||||||| ||||||| |||||| | ||| || || ||||| || | |||||| Sbjct 71 AGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 130 Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| || | || ||||||||| || || |||||||| Sbjct 131 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 168 >seq116363 Length=44347 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29875 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 29934 |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || || Sbjct 21703 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 21644 Query 29935 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994 || |||||||| |||| || |||||| | ||| || || ||||| || | |||||| Sbjct 21643 AGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAG 21584 Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| || | || ||||||||| || || |||||||| Sbjct 21583 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 21546 >seq1495313 Length=124 Score = 102 bits (112), Expect = 6e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 29804 GCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCG 29863 |||| || | ||||| |||||| ||||| || |||||||| ||||| ||||| || || | Sbjct 124 GCGGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTG 65 Query 29864 GTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAA 29923 | | || | |||| ||| || |||||||| ||||| || | |||||||||||||| | Sbjct 64 GCTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGA 5 Query 29924 AGGG 29927 |||| Sbjct 4 AGGG 1 >seq118786 Length=8115 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 2833 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 2774 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 2773 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393236731830203