Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq2585192 132 4e-26
seq116363 127 2e-24
seq1495313 102 6e-17
seq118786 87.8 1e-12
>seq2585192
Length=178
Score = 132 bits (146), Expect = 4e-26
Identities = 124/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 29875 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 29934
|||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || ||
Sbjct 11 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 70
Query 29935 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994
|| |||||||| ||||||| |||||| | ||| || || ||||| || | ||||||
Sbjct 71 AGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 130
Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| || | || ||||||||| || || ||||||||
Sbjct 131 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 168
>seq116363
Length=44347
Score = 127 bits (140), Expect = 2e-24
Identities = 123/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 29875 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 29934
|||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || ||
Sbjct 21703 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 21644
Query 29935 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994
|| |||||||| |||| || |||||| | ||| || || ||||| || | ||||||
Sbjct 21643 AGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCCACGTAG 21584
Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| || | || ||||||||| || || ||||||||
Sbjct 21583 AACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 21546
>seq1495313
Length=124
Score = 102 bits (112), Expect = 6e-17
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 29804 GCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCG 29863
|||| || | ||||| |||||| ||||| || |||||||| ||||| ||||| || || |
Sbjct 124 GCGGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTG 65
Query 29864 GTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAA 29923
| | || | |||| ||| || |||||||| ||||| || | |||||||||||||| |
Sbjct 64 GCTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGA 5
Query 29924 AGGG 29927
||||
Sbjct 4 AGGG 1
>seq118786
Length=8115
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 2833 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 2774
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| ||||| |||||||| ||||||| ||||| || |||
Sbjct 2773 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 393236731830203
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |