Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq319551 188 1e-42 seq2969742 170 3e-37 seq2952710 125 1e-23 seq2851609 113 8e-20 seq90113 105 1e-17 >seq319551 Length=751 Score = 188 bits (208), Expect = 1e-42 Identities = 317/450 (70%), Gaps = 14/450 (3%) Strand=Plus/Minus Query 22939 TATTTCCCTTTGCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGA 22998 || || ||| |||||| |||||| ||||| || | || || || | | |||||| Sbjct 696 TACTTGCCTGCGCGGTCCTTGTAGGACACTTCACAGGCCTCGTCGGACTGCAGGAACAGC 637 Query 22999 ATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAAC 23058 || ||||| ||||| ||||||||| ||||| | ||||| ||||| ||| Sbjct 636 ATCTGTGCCACGCCTTCATTGGCGTAGATCTTCGCCGGCAACGTGGTGGTGTTGGAGAAC 577 Query 23059 TCCAGAGTAAGCGAG-CCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCC 23117 ||||| || | || | |||| ||| || || || |||||||| ||||| ||||||||||| Sbjct 576 TCCAGGGTCA-CGTGACCTTCCCACTCGGGCTCAAGCGGCGTCACGTTGACGATGATGCC 518 Query 23118 GCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAA 23177 ||| ||||| || || |||||| | ||| || | ||||||||||| ||| ||| Sbjct 517 GCAGCGCGCGTAGGTGCTTTTGCCCAAGCAAATGGTCAGCACGTCACGCGGGATGCGGAA 458 Query 23178 GTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGT 23236 ||| ||| ||||| ||||| ||| ||||| ||||| || | | | | Sbjct 457 AAACTCCACGGTGCGCGCCAGGGCGAAGGAGTTGGGCGGGATGATGCACACGTCG--CTC 400 Query 23237 TTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGT 23296 ||| ||| ||| ||||| | | |||| ||||||||| || ||||| | ||| Sbjct 399 TTG--ACG----TCG--ACGAAGCTCTTTTCGTCGAAATTCTTCGGGTCGACGATCGCCG 348 Query 23297 TATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGG 23356 || | |||||||| ||||||||||||| ||||||| | |||||||| ||||||| Sbjct 347 AGTTGATATTGGTGAACACCTTGAATTCGTCGGCGCAACGCACGTCGTAGCCATAGCTGG 288 Query 23357 AAACACCGTAGGGAATGATC-GAGCGTTGC 23385 |||||||||| | ||| | | |||||| || Sbjct 287 AAACACCGTACGAAATCACCGGAGCGTCGC 258 >seq2969742 Length=514 Score = 170 bits (188), Expect = 3e-37 Identities = 283/399 (71%), Gaps = 15/399 (4%) Strand=Plus/Plus Query 22951 CGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAA 23010 ||||| |||||| ||||| ||| | || || || | | |||||| || ||||| | Sbjct 128 CGGTCCTTGTAGGACACTTCACACGCCTCGTCGGACTGCAGGAACAGCATCTGTGCCACA 187 Query 23011 CCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTG-TGGTATTGGAAAACTCCAGAGTAAG 23069 ||||| |||||||| ||||| | |||| |||| ||||| |||||||| || | Sbjct 188 CCTTCATTGGCGTAGATTTTCGCCGG-CAAGGTGGTGGTGTTGGAGAACTCCAGGGTCA- 245 Query 23070 CGAG-CCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCAT 23128 || | |||| ||| || ||||||||||| || ||||| ||||||||||||||||| |||| Sbjct 246 CGTGACCTTCCCACTCGGGTTCCAGCGGGGTCACGTTGACGATGATGCCGCAACGGGCAT 305 Query 23129 ACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCG 23188 | || ||| || |||||||| |||||||| || ||||| ||| |||| | Sbjct 306 AAGTGCTTTTACCCAGGCAGATGGTCAATACGTCCCGAGGAATACGAAAGAATTCCACGG 365 Query 23189 TGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGC 23247 || ||||| ||||| ||| ||||| ||||| || | | | | ||| ||| Sbjct 366 TGCGGGCCAGGGCGAAGGAGTTTGGCGGGATGATGCACACGTCG--CTCTTG--ACG--- 418 Query 23248 TTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTG 23307 ||| ||||| | | |||| ||| ||||| |||||||| | ||| || | ||| Sbjct 419 -TCG--ACGAAGCTTTTTTCGTCGAAGTTCTTCGGATCGACGATCGCCGAGTTGATATTG 475 Query 23308 GTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAG 23346 ||||| ||||||||||| | ||||||| | |||||| Sbjct 476 GTGAACACCTTGAATTCATCGGCGCAACGCACGTCGTAG 514 >seq2952710 Length=454 Score = 125 bits (138), Expect = 1e-23 Identities = 271/398 (68%), Gaps = 13/398 (3%) Strand=Plus/Plus Query 22951 CGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAA 23010 ||||| |||||| ||||| || | || || || | | ||||| || ||||| Sbjct 68 CGGTCCTTGTAGGACACTTCACAGGCCTCGTCGGACTGCAGGAACAACATCTGTGCCACG 127 Query 23011 CCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGC 23070 ||||| ||||||||| ||||| | ||||| ||||| |||||||| || | | Sbjct 128 CCTTCATTGGCGTAGATCTTGGCCGGCAACGTGGTGGTGTTGGAGAACTCCAGGGTCA-C 186 Query 23071 GAG-CCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATA 23129 | | |||| ||| || || || |||||||| ||||| ||||| |||||||| ||||| || Sbjct 187 GTGACCTTCCCACTCGGGCTCGAGCGGCGTCACGTTGACGATAATGCCGCAGCGCGCGTA 246 Query 23130 CGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGT 23189 || ||| || |||||||| | ||||||||||| ||| ||| ||| || Sbjct 247 GGTGCTTTTACCCAGGCAGATGGTCAGCACGTCACGCGGGATGCGGAAAAACTCCACGGT 306 Query 23190 GTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCT 23248 | ||||| ||||| ||| ||||| ||||| || | | | | ||| ||| Sbjct 307 GCGCGCCAGGGCGAAGGAGTTTGGCGGGATGATGCACACGTCG--CTCTTG--ACG---- 358 Query 23249 TCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGG 23308 ||| || || | | ||| ||| ||||| || ||||| | ||| || | |||| Sbjct 359 TCG--ACAAAGCTCTTCTCGTCGAAGTTCTTCGGGTCGACGATCGCCGAGTTGATATTGG 416 Query 23309 TGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAG 23346 |||| ||||||||||| | ||||||| | |||||| Sbjct 417 TGAACACCTTGAATTCATCGGCGCAACGCACGTCGTAG 454 >seq2851609 Length=271 Score = 113 bits (124), Expect = 8e-20 Identities = 180/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 22968 TTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGAT 23027 ||| || |||| || || | | |||||| || || || |||||| |||||||| Sbjct 271 TTCACAGGCTTCGTCGGACTGCAGGAACAGCATCTGCGCCACGCCTTCGTTGGCGTAGAT 212 Query 23028 CAGTGCCGGGCTTGGTG-TGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTG 23086 | ||||| | |||| |||| ||||| |||||||| || | ||||| ||| || | Sbjct 211 CTTGGCCGG-CAAGGTGGTGGTGTTGGAGAACTCCAGGGTCACGTGGCCTTCCCACTCCG 153 Query 23087 GTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGC 23146 | || || ||||| ||||| |||||||||||||| || || || || ||| || |||| Sbjct 152 GCTCAAGGGGCGTCACGTTAACGATGATGCCGCAGCGTGCGTAGGTGCTTTTACCCAGGC 93 Query 23147 AGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAAC 23206 |||| | |||||||| ||||| ||| |||| ||| ||||| || || Sbjct 92 AGATGGTCAGCACGTCACGGGGAATCCGAAAGAATTCCACGGTGCGCGCCAGGGCAAAGG 33 Query 23207 TGTTCGGCGGAATGAT 23222 ||| ||||||||||| Sbjct 32 AGTTTGGCGGAATGAT 17 >seq90113 Length=4134 Score = 105 bits (116), Expect = 1e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 23044 GTGGTATTGGAAAACTCCAGAGTAAGCGAG-CCTTTCCATTCTGGTTCCAGCGGCGTGAC 23102 ||||| ||||| |||||||| || | || | |||| ||| || || || || ||||| || Sbjct 3940 GTGGTGTTGGAGAACTCCAGGGTCA-CGTGACCTTCCCACTCAGGCTCAAGTGGCGTCAC 3998 Query 23103 GTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTC 23162 ||| |||||||||||||| ||||| || || ||| || |||||||| | ||||| Sbjct 3999 GTTAACGATGATGCCGCAGCGCGCGTAGGTGCTTTTACCCAGGCAGATGGTCAGCACGTC 4058 Query 23163 ACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT 23222 ||| ||||| |||| |||| ||| ||||| || || ||| ||||||||||| Sbjct 4059 ACGGGGAATCCGGAAGAATTCCACGGTGCGCGCCAGGGCAAAGGAGTTTGGCGGAATGAT 4118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 862940753660880