Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_017972.1
Length=280538
Score E
Sequences producing significant alignments: (Bits) Value
seq319551 188 1e-42
seq2969742 170 3e-37
seq2952710 125 1e-23
seq2851609 113 8e-20
seq90113 105 1e-17
>seq319551
Length=751
Score = 188 bits (208), Expect = 1e-42
Identities = 317/450 (70%), Gaps = 14/450 (3%)
Strand=Plus/Minus
Query 22939 TATTTCCCTTTGCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGA 22998
|| || ||| |||||| |||||| ||||| || | || || || | | ||||||
Sbjct 696 TACTTGCCTGCGCGGTCCTTGTAGGACACTTCACAGGCCTCGTCGGACTGCAGGAACAGC 637
Query 22999 ATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAAC 23058
|| ||||| ||||| ||||||||| ||||| | ||||| ||||| |||
Sbjct 636 ATCTGTGCCACGCCTTCATTGGCGTAGATCTTCGCCGGCAACGTGGTGGTGTTGGAGAAC 577
Query 23059 TCCAGAGTAAGCGAG-CCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCC 23117
||||| || | || | |||| ||| || || || |||||||| ||||| |||||||||||
Sbjct 576 TCCAGGGTCA-CGTGACCTTCCCACTCGGGCTCAAGCGGCGTCACGTTGACGATGATGCC 518
Query 23118 GCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAA 23177
||| ||||| || || |||||| | ||| || | ||||||||||| ||| |||
Sbjct 517 GCAGCGCGCGTAGGTGCTTTTGCCCAAGCAAATGGTCAGCACGTCACGCGGGATGCGGAA 458
Query 23178 GTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGT 23236
||| ||| ||||| ||||| ||| ||||| ||||| || | | | |
Sbjct 457 AAACTCCACGGTGCGCGCCAGGGCGAAGGAGTTGGGCGGGATGATGCACACGTCG--CTC 400
Query 23237 TTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGT 23296
||| ||| ||| ||||| | | |||| ||||||||| || ||||| | |||
Sbjct 399 TTG--ACG----TCG--ACGAAGCTCTTTTCGTCGAAATTCTTCGGGTCGACGATCGCCG 348
Query 23297 TATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGG 23356
|| | |||||||| ||||||||||||| ||||||| | |||||||| |||||||
Sbjct 347 AGTTGATATTGGTGAACACCTTGAATTCGTCGGCGCAACGCACGTCGTAGCCATAGCTGG 288
Query 23357 AAACACCGTAGGGAATGATC-GAGCGTTGC 23385
|||||||||| | ||| | | |||||| ||
Sbjct 287 AAACACCGTACGAAATCACCGGAGCGTCGC 258
>seq2969742
Length=514
Score = 170 bits (188), Expect = 3e-37
Identities = 283/399 (71%), Gaps = 15/399 (4%)
Strand=Plus/Plus
Query 22951 CGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAA 23010
||||| |||||| ||||| ||| | || || || | | |||||| || ||||| |
Sbjct 128 CGGTCCTTGTAGGACACTTCACACGCCTCGTCGGACTGCAGGAACAGCATCTGTGCCACA 187
Query 23011 CCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTG-TGGTATTGGAAAACTCCAGAGTAAG 23069
||||| |||||||| ||||| | |||| |||| ||||| |||||||| || |
Sbjct 188 CCTTCATTGGCGTAGATTTTCGCCGG-CAAGGTGGTGGTGTTGGAGAACTCCAGGGTCA- 245
Query 23070 CGAG-CCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCAT 23128
|| | |||| ||| || ||||||||||| || ||||| ||||||||||||||||| ||||
Sbjct 246 CGTGACCTTCCCACTCGGGTTCCAGCGGGGTCACGTTGACGATGATGCCGCAACGGGCAT 305
Query 23129 ACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCG 23188
| || ||| || |||||||| |||||||| || ||||| ||| |||| |
Sbjct 306 AAGTGCTTTTACCCAGGCAGATGGTCAATACGTCCCGAGGAATACGAAAGAATTCCACGG 365
Query 23189 TGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGC 23247
|| ||||| ||||| ||| ||||| ||||| || | | | | ||| |||
Sbjct 366 TGCGGGCCAGGGCGAAGGAGTTTGGCGGGATGATGCACACGTCG--CTCTTG--ACG--- 418
Query 23248 TTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTG 23307
||| ||||| | | |||| ||| ||||| |||||||| | ||| || | |||
Sbjct 419 -TCG--ACGAAGCTTTTTTCGTCGAAGTTCTTCGGATCGACGATCGCCGAGTTGATATTG 475
Query 23308 GTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAG 23346
||||| ||||||||||| | ||||||| | ||||||
Sbjct 476 GTGAACACCTTGAATTCATCGGCGCAACGCACGTCGTAG 514
>seq2952710
Length=454
Score = 125 bits (138), Expect = 1e-23
Identities = 271/398 (68%), Gaps = 13/398 (3%)
Strand=Plus/Plus
Query 22951 CGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAA 23010
||||| |||||| ||||| || | || || || | | ||||| || |||||
Sbjct 68 CGGTCCTTGTAGGACACTTCACAGGCCTCGTCGGACTGCAGGAACAACATCTGTGCCACG 127
Query 23011 CCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGC 23070
||||| ||||||||| ||||| | ||||| ||||| |||||||| || | |
Sbjct 128 CCTTCATTGGCGTAGATCTTGGCCGGCAACGTGGTGGTGTTGGAGAACTCCAGGGTCA-C 186
Query 23071 GAG-CCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATA 23129
| | |||| ||| || || || |||||||| ||||| ||||| |||||||| ||||| ||
Sbjct 187 GTGACCTTCCCACTCGGGCTCGAGCGGCGTCACGTTGACGATAATGCCGCAGCGCGCGTA 246
Query 23130 CGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGT 23189
|| ||| || |||||||| | ||||||||||| ||| ||| ||| ||
Sbjct 247 GGTGCTTTTACCCAGGCAGATGGTCAGCACGTCACGCGGGATGCGGAAAAACTCCACGGT 306
Query 23190 GTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCT 23248
| ||||| ||||| ||| ||||| ||||| || | | | | ||| |||
Sbjct 307 GCGCGCCAGGGCGAAGGAGTTTGGCGGGATGATGCACACGTCG--CTCTTG--ACG---- 358
Query 23249 TCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGG 23308
||| || || | | ||| ||| ||||| || ||||| | ||| || | ||||
Sbjct 359 TCG--ACAAAGCTCTTCTCGTCGAAGTTCTTCGGGTCGACGATCGCCGAGTTGATATTGG 416
Query 23309 TGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAG 23346
|||| ||||||||||| | ||||||| | ||||||
Sbjct 417 TGAACACCTTGAATTCATCGGCGCAACGCACGTCGTAG 454
>seq2851609
Length=271
Score = 113 bits (124), Expect = 8e-20
Identities = 180/256 (70%), Gaps = 2/256 (1%)
Strand=Plus/Minus
Query 22968 TTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGAT 23027
||| || |||| || || | | |||||| || || || |||||| ||||||||
Sbjct 271 TTCACAGGCTTCGTCGGACTGCAGGAACAGCATCTGCGCCACGCCTTCGTTGGCGTAGAT 212
Query 23028 CAGTGCCGGGCTTGGTG-TGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTG 23086
| ||||| | |||| |||| ||||| |||||||| || | ||||| ||| || |
Sbjct 211 CTTGGCCGG-CAAGGTGGTGGTGTTGGAGAACTCCAGGGTCACGTGGCCTTCCCACTCCG 153
Query 23087 GTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGC 23146
| || || ||||| ||||| |||||||||||||| || || || || ||| || ||||
Sbjct 152 GCTCAAGGGGCGTCACGTTAACGATGATGCCGCAGCGTGCGTAGGTGCTTTTACCCAGGC 93
Query 23147 AGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAAC 23206
|||| | |||||||| ||||| ||| |||| ||| ||||| || ||
Sbjct 92 AGATGGTCAGCACGTCACGGGGAATCCGAAAGAATTCCACGGTGCGCGCCAGGGCAAAGG 33
Query 23207 TGTTCGGCGGAATGAT 23222
||| |||||||||||
Sbjct 32 AGTTTGGCGGAATGAT 17
>seq90113
Length=4134
Score = 105 bits (116), Expect = 1e-17
Identities = 133/180 (74%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 23044 GTGGTATTGGAAAACTCCAGAGTAAGCGAG-CCTTTCCATTCTGGTTCCAGCGGCGTGAC 23102
||||| ||||| |||||||| || | || | |||| ||| || || || || ||||| ||
Sbjct 3940 GTGGTGTTGGAGAACTCCAGGGTCA-CGTGACCTTCCCACTCAGGCTCAAGTGGCGTCAC 3998
Query 23103 GTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTC 23162
||| |||||||||||||| ||||| || || ||| || |||||||| | |||||
Sbjct 3999 GTTAACGATGATGCCGCAGCGCGCGTAGGTGCTTTTACCCAGGCAGATGGTCAGCACGTC 4058
Query 23163 ACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT 23222
||| ||||| |||| |||| ||| ||||| || || ||| |||||||||||
Sbjct 4059 ACGGGGAATCCGGAAGAATTCCACGGTGCGCGCCAGGGCAAAGGAGTTTGGCGGAATGAT 4118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 862940753660880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |