Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq2951953 161 3e-35 seq2799564 161 3e-35 seq268701 154 5e-33 >seq2951953 Length=451 Score = 161 bits (178), Expect = 3e-35 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003 ||| | || |||||||||||| | || ||| || |||||||||||||| |||| | Sbjct 187 GCCCAGCAACTGCATGGTTCCTTGCATGTCGACTACGATTTCAGTGGTGTAACGCTTGAT 246 Query 26004 GCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTT 26063 |||||| |||||||||| |||||||| ||| | || || ||||| ||||| |||||||| Sbjct 247 GCCGTCTTTTTCCCACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTT 306 Query 26064 CTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTC 26123 ||||||||| || |||||||| || |||||||| |||| | ||||| ||||| || Sbjct 307 GCGCAGGTACTCACCAGCGATCTCTGCAACCTTGCCGAACAACGACACGCGGTGCCACTC 366 Query 26124 TGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCA 26162 || ||||| ||| ||||||||| ||| |||| Sbjct 367 GGTTTTCTCTTTGCGCTCGTTGGTCTGCTTGTCGGTCCA 405 >seq2799564 Length=235 Score = 161 bits (178), Expect = 3e-35 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 25986 AGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAAT 26045 ||||||||| |||| | |||||| |||||||||| |||||||| ||||| || || || Sbjct 235 AGTGGTGTAACGCTTGATGCCGTCTTTTTCCCACTCGCGGGTTTGCAGTTTGCCTTCGAT 176 Query 26046 GTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAG 26105 ||||||||| |||||||| |||||||||||| |||||||| || |||||||| |||| Sbjct 175 GTAAACCTGCGAACCTTTGCGCAGGTACTCGCCGGCGATCTCTGCAACCTTGCCGAACAT 116 Query 26106 CACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCT 26165 | ||||| |||||||| || || ||| | |||||||||||| || |||| Sbjct 115 CGACACGCGGTGCCATTCGGTTTTCTCGACCTTCTGGCCGGTCTGCTTGTCAGTCCACTG 56 Query 26166 TTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACG 26219 ||| |||||| | | | ||||| || ||| || ||||||| ||| || Sbjct 55 TTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTACCGTTAGGCAAGTAGCG 2 >seq268701 Length=8118 Score = 154 bits (170), Expect = 5e-33 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003 ||||| || |||||||| || | || |||||| ||||| |||||||| |||| | Sbjct 7907 GCCGAGCAGTTGCATGGTGCCTTGCATGTCGACCACGATTTCGGTGGTGTAACGCTTGAT 7966 Query 26004 GCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTT 26063 |||||| |||||||||| |||||||| ||||| || |||||||||||||| |||||||| Sbjct 7967 GCCGTCTTTTTCCCACTCGCGGGTTTGCAGTTTGCCTTCAATGTAAACCTGCGAACCTTT 8026 Query 26064 CTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTC 26123 |||||| || || ||||| || || |||||||| |||| | || || |||||||| Sbjct 8027 GCGCAGGTATTCACCGGCGATTTCTGCCACCTTGCCGAACATCGACACACGGTGCCATTC 8086 Query 26124 TGTCACTTCTTTCTTTTCGCCGGTCTGCTT 26153 || || ||| | ||| |||||||| Sbjct 8087 GGTTTTCTCGACCTTCTGGCCAGTCTGCTT 8116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153956118814826