Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_017981.1
Length=49981
Score E
Sequences producing significant alignments: (Bits) Value
seq2951953 161 3e-35
seq2799564 161 3e-35
seq268701 154 5e-33
>seq2951953
Length=451
Score = 161 bits (178), Expect = 3e-35
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003
||| | || |||||||||||| | || ||| || |||||||||||||| |||| |
Sbjct 187 GCCCAGCAACTGCATGGTTCCTTGCATGTCGACTACGATTTCAGTGGTGTAACGCTTGAT 246
Query 26004 GCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTT 26063
|||||| |||||||||| |||||||| ||| | || || ||||| ||||| ||||||||
Sbjct 247 GCCGTCTTTTTCCCACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTT 306
Query 26064 CTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTC 26123
||||||||| || |||||||| || |||||||| |||| | ||||| ||||| ||
Sbjct 307 GCGCAGGTACTCACCAGCGATCTCTGCAACCTTGCCGAACAACGACACGCGGTGCCACTC 366
Query 26124 TGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCA 26162
|| ||||| ||| ||||||||| ||| ||||
Sbjct 367 GGTTTTCTCTTTGCGCTCGTTGGTCTGCTTGTCGGTCCA 405
>seq2799564
Length=235
Score = 161 bits (178), Expect = 3e-35
Identities = 176/234 (75%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 25986 AGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAAT 26045
||||||||| |||| | |||||| |||||||||| |||||||| ||||| || || ||
Sbjct 235 AGTGGTGTAACGCTTGATGCCGTCTTTTTCCCACTCGCGGGTTTGCAGTTTGCCTTCGAT 176
Query 26046 GTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAG 26105
||||||||| |||||||| |||||||||||| |||||||| || |||||||| ||||
Sbjct 175 GTAAACCTGCGAACCTTTGCGCAGGTACTCGCCGGCGATCTCTGCAACCTTGCCGAACAT 116
Query 26106 CACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCT 26165
| ||||| |||||||| || || ||| | |||||||||||| || ||||
Sbjct 115 CGACACGCGGTGCCATTCGGTTTTCTCGACCTTCTGGCCGGTCTGCTTGTCAGTCCACTG 56
Query 26166 TTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACG 26219
||| |||||| | | | ||||| || ||| || ||||||| ||| ||
Sbjct 55 TTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTACCGTTAGGCAAGTAGCG 2
>seq268701
Length=8118
Score = 154 bits (170), Expect = 5e-33
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 25944 GCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAAC 26003
||||| || |||||||| || | || |||||| ||||| |||||||| |||| |
Sbjct 7907 GCCGAGCAGTTGCATGGTGCCTTGCATGTCGACCACGATTTCGGTGGTGTAACGCTTGAT 7966
Query 26004 GCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTT 26063
|||||| |||||||||| |||||||| ||||| || |||||||||||||| ||||||||
Sbjct 7967 GCCGTCTTTTTCCCACTCGCGGGTTTGCAGTTTGCCTTCAATGTAAACCTGCGAACCTTT 8026
Query 26064 CTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTC 26123
|||||| || || ||||| || || |||||||| |||| | || || ||||||||
Sbjct 8027 GCGCAGGTATTCACCGGCGATTTCTGCCACCTTGCCGAACATCGACACACGGTGCCATTC 8086
Query 26124 TGTCACTTCTTTCTTTTCGCCGGTCTGCTT 26153
|| || ||| | ||| ||||||||
Sbjct 8087 GGTTTTCTCGACCTTCTGGCCAGTCTGCTT 8116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 153956118814826
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |