Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_018269.1
Length=31766
Score E
Sequences producing significant alignments: (Bits) Value
seq366846 134 3e-27
seq3023355 127 4e-25
seq3047186 122 2e-23
seq2815396 113 9e-21
seq2453999 104 5e-18
>seq366846
Length=1509
Score = 134 bits (148), Expect = 3e-27
Identities = 223/322 (69%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 25038 TCAGAAATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCG 25097
|| ||||| ||| || || || || |||| || ||||| || || || || | |||
Sbjct 507 TCCGAAATCTCGCGGTCGCTCAAGGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTGGCG 448
Query 25098 TTATCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGAC 25157
| || ||||| ||||| || ||| | | | | | |||||||| | ||||| |||
Sbjct 447 CTGTCCCAGCTCAACCGTTCCCTGGAACAACGCCCGAACAAGCGCCCGGTGAACTCCGAC 388
Query 25158 TTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGAC 25217
||||| || || || ||||| || ||||||||||| | ||| || | ||||| |||
Sbjct 387 TTGCGTGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTTCGTGTACCGCGAC 328
Query 25218 GAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACAC 25277
|| |||||| ||||||| | |||||||||||||||| || ||||| ||||| ||
Sbjct 327 GAGGTGTATCACCCCGAGACGGAACACAAAGGCATTGCCGAAATCATCATCGGCAAGCAG 268
Query 25278 AGGAATGGCGAGCTAGGCACAGTGAGAGCGGCATTCATTGGGCAGTACACGCGATTTGAA 25337
|||| || | ||| | | ||| || || || |||||||||| || |||
Sbjct 267 CGGAACGGACCAATTGGCTTTATCCGCCTGGCGTTTATCGGTAAGTACACGCGCTTCGAA 208
Query 25338 AACCTATCACCAGAGAGCTATA 25359
||||| | || | |||||||
Sbjct 207 AACCTGGCGCCGGGCAGCTATA 186
>seq3023355
Length=832
Score = 127 bits (140), Expect = 4e-25
Identities = 177/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 25038 TCAGAAATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCG 25097
|| ||||| || ||| || ||| || |||| || ||||| || || || || | |||
Sbjct 569 TCCGAAATCTCCCGATCGCTCAAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTGGCG 628
Query 25098 TTATCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGAC 25157
| || ||||| ||||| || || | | | | | |||||||| | ||||| |||
Sbjct 629 CTGTCCCAGCTCAACCGTTCCCTGGAGCAACGGCCGAACAAGCGCCCGGTGAACTCCGAC 688
Query 25158 TTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGAC 25217
||||| || || || ||||| || |||||||| || | ||| || | ||||| |||
Sbjct 689 TTGCGGGAATCCGGAGCGATCGAGCAGGATGCCGACGTGATCATGTTCGTGTACCGCGAC 748
Query 25218 GAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACAC 25277
|| |||||| ||||||| | ||||||||||||||||||| ||||| ||||| ||
Sbjct 749 GAGGTGTATCACCCCGAGACGGAGCACAAAGGCATTGCCGAGATCATCATCGGCAAGCAG 808
Query 25278 AGGAATGG 25285
|||| ||
Sbjct 809 CGGAACGG 816
>seq3047186
Length=1103
Score = 122 bits (134), Expect = 2e-23
Identities = 201/290 (69%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 25053 TCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAAC 25112
|| || ||| || |||| || ||||| || || || || | ||| | || ||||| |||
Sbjct 704 TCCCTGAAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAAC 763
Query 25113 CGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGC 25172
|| || ||| | | | | |||||||| | ||||| |||||||| || || ||
Sbjct 764 CGCTCCCTGGAACAACGCCCCAACAAGCGCCCGGTGAACTCCGACTTGCGTGAATCCGGA 823
Query 25173 GCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCC 25232
||||| || ||||| || || | ||| || | ||||| ||||| |||||| |||||
Sbjct 824 GCGATCGAGCAGGACGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCC 883
Query 25233 GACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGGCGAGCTA 25292
|| | |||| |||||||||||||| ||||| ||||| || |||| || |
Sbjct 884 GAAACGGAACACAAGGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGGGCCTATC 943
Query 25293 GGCACAGTGAGAGCGGCATTCATTGGGCAGTACACGCGATTTGAAAACCT 25342
||| | | ||| ||||| || |||||||||| || ||||||||
Sbjct 944 GGCTTTATCCGCCTGGCGTTCATCGGCAAGTACACGCGCTTCGAAAACCT 993
>seq2815396
Length=244
Score = 113 bits (124), Expect = 9e-21
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 25066 TGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAAA 25125
|||| || ||||| || || || || | ||| | || ||||| ||||| || |||
Sbjct 242 TGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCGCAGCTCAACCGTTCCCTGGAAC 183
Query 25126 ACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGG 25185
| | | | |||||||| | ||||| ||| ||||||| || || ||||| || ||||
Sbjct 182 AGCGTCCCAACAAGCGCCCGGTGAACTCCGACCTGCGCGAATCCGGAGCGATCGAGCAGG 123
Query 25186 ATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACA 25245
||||||| | ||| || | ||||| ||||| ||||| ||||||| | | |
Sbjct 122 ATGCTGACGTGATCATGTTTGTGTACCGGGACGAGGTGTACCACCCCGAAACGGAACATA 63
Query 25246 AAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGG 25285
|||||||||||||||| ||||| ||||| || |||| ||
Sbjct 62 AAGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGG 23
>seq2453999
Length=160
Score = 104 bits (114), Expect = 5e-18
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 25149 AACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATA 25208
||||| |||||||| || || || ||||| || ||||||||||| | ||| || |
Sbjct 8 AACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTTTGTG 67
Query 25209 TACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATT 25268
||||| ||||| ||||| ||||||| | | ||||||||||||||||||| |||||
Sbjct 68 TACCGCGACGAGGTGTACCACCCCGAGACCGAGCACAAAGGCATTGCCGAGATCATCATC 127
Query 25269 GGCAAACACAGGAATGG 25285
||||| || |||| ||
Sbjct 128 GGCAAGCAGCGGAACGG 144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97805893473696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |