Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_018269.1 Length=31766 Score E Sequences producing significant alignments: (Bits) Value seq366846 134 3e-27 seq3023355 127 4e-25 seq3047186 122 2e-23 seq2815396 113 9e-21 seq2453999 104 5e-18 >seq366846 Length=1509 Score = 134 bits (148), Expect = 3e-27 Identities = 223/322 (69%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 25038 TCAGAAATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCG 25097 || ||||| ||| || || || || |||| || ||||| || || || || | ||| Sbjct 507 TCCGAAATCTCGCGGTCGCTCAAGGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTGGCG 448 Query 25098 TTATCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGAC 25157 | || ||||| ||||| || ||| | | | | | |||||||| | ||||| ||| Sbjct 447 CTGTCCCAGCTCAACCGTTCCCTGGAACAACGCCCGAACAAGCGCCCGGTGAACTCCGAC 388 Query 25158 TTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGAC 25217 ||||| || || || ||||| || ||||||||||| | ||| || | ||||| ||| Sbjct 387 TTGCGTGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTTCGTGTACCGCGAC 328 Query 25218 GAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACAC 25277 || |||||| ||||||| | |||||||||||||||| || ||||| ||||| || Sbjct 327 GAGGTGTATCACCCCGAGACGGAACACAAAGGCATTGCCGAAATCATCATCGGCAAGCAG 268 Query 25278 AGGAATGGCGAGCTAGGCACAGTGAGAGCGGCATTCATTGGGCAGTACACGCGATTTGAA 25337 |||| || | ||| | | ||| || || || |||||||||| || ||| Sbjct 267 CGGAACGGACCAATTGGCTTTATCCGCCTGGCGTTTATCGGTAAGTACACGCGCTTCGAA 208 Query 25338 AACCTATCACCAGAGAGCTATA 25359 ||||| | || | ||||||| Sbjct 207 AACCTGGCGCCGGGCAGCTATA 186 >seq3023355 Length=832 Score = 127 bits (140), Expect = 4e-25 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 25038 TCAGAAATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCG 25097 || ||||| || ||| || ||| || |||| || ||||| || || || || | ||| Sbjct 569 TCCGAAATCTCCCGATCGCTCAAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTGGCG 628 Query 25098 TTATCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGAC 25157 | || ||||| ||||| || || | | | | | |||||||| | ||||| ||| Sbjct 629 CTGTCCCAGCTCAACCGTTCCCTGGAGCAACGGCCGAACAAGCGCCCGGTGAACTCCGAC 688 Query 25158 TTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGAC 25217 ||||| || || || ||||| || |||||||| || | ||| || | ||||| ||| Sbjct 689 TTGCGGGAATCCGGAGCGATCGAGCAGGATGCCGACGTGATCATGTTCGTGTACCGCGAC 748 Query 25218 GAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACAC 25277 || |||||| ||||||| | ||||||||||||||||||| ||||| ||||| || Sbjct 749 GAGGTGTATCACCCCGAGACGGAGCACAAAGGCATTGCCGAGATCATCATCGGCAAGCAG 808 Query 25278 AGGAATGG 25285 |||| || Sbjct 809 CGGAACGG 816 >seq3047186 Length=1103 Score = 122 bits (134), Expect = 2e-23 Identities = 201/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 25053 TCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAAC 25112 || || ||| || |||| || ||||| || || || || | ||| | || ||||| ||| Sbjct 704 TCCCTGAAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAAC 763 Query 25113 CGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGC 25172 || || ||| | | | | |||||||| | ||||| |||||||| || || || Sbjct 764 CGCTCCCTGGAACAACGCCCCAACAAGCGCCCGGTGAACTCCGACTTGCGTGAATCCGGA 823 Query 25173 GCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCC 25232 ||||| || ||||| || || | ||| || | ||||| ||||| |||||| ||||| Sbjct 824 GCGATCGAGCAGGACGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCC 883 Query 25233 GACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGGCGAGCTA 25292 || | |||| |||||||||||||| ||||| ||||| || |||| || | Sbjct 884 GAAACGGAACACAAGGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGGGCCTATC 943 Query 25293 GGCACAGTGAGAGCGGCATTCATTGGGCAGTACACGCGATTTGAAAACCT 25342 ||| | | ||| ||||| || |||||||||| || |||||||| Sbjct 944 GGCTTTATCCGCCTGGCGTTCATCGGCAAGTACACGCGCTTCGAAAACCT 993 >seq2815396 Length=244 Score = 113 bits (124), Expect = 9e-21 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 25066 TGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAAA 25125 |||| || ||||| || || || || | ||| | || ||||| ||||| || ||| Sbjct 242 TGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCGCAGCTCAACCGTTCCCTGGAAC 183 Query 25126 ACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGG 25185 | | | | |||||||| | ||||| ||| ||||||| || || ||||| || |||| Sbjct 182 AGCGTCCCAACAAGCGCCCGGTGAACTCCGACCTGCGCGAATCCGGAGCGATCGAGCAGG 123 Query 25186 ATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACA 25245 ||||||| | ||| || | ||||| ||||| ||||| ||||||| | | | Sbjct 122 ATGCTGACGTGATCATGTTTGTGTACCGGGACGAGGTGTACCACCCCGAAACGGAACATA 63 Query 25246 AAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGG 25285 |||||||||||||||| ||||| ||||| || |||| || Sbjct 62 AAGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGG 23 >seq2453999 Length=160 Score = 104 bits (114), Expect = 5e-18 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 25149 AACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATA 25208 ||||| |||||||| || || || ||||| || ||||||||||| | ||| || | Sbjct 8 AACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTTTGTG 67 Query 25209 TACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATT 25268 ||||| ||||| ||||| ||||||| | | ||||||||||||||||||| ||||| Sbjct 68 TACCGCGACGAGGTGTACCACCCCGAGACCGAGCACAAAGGCATTGCCGAGATCATCATC 127 Query 25269 GGCAAACACAGGAATGG 25285 ||||| || |||| || Sbjct 128 GGCAAGCAGCGGAACGG 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97805893473696