Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_018279.1
Length=49116
Score E
Sequences producing significant alignments: (Bits) Value
seq289766 190 6e-44
seq3088211 181 3e-41
seq3031070 163 9e-36
seq3083599 91.5 4e-14
>seq289766
Length=704
Score = 190 bits (210), Expect = 6e-44
Identities = 325/467 (70%), Gaps = 7/467 (1%)
Strand=Plus/Plus
Query 48618 AGGCTGACCTCTGCTTCATGTGGGCGTC--CGATTCGTTCGCTAAGAAAGGGCGGTATGT 48675
|||| ||| || | ||||||||||||| ||| |||| ||| | || || ||
Sbjct 1 AGGCAGACATCAGGGTCATGTGGGCGTCGTCGAGC--TTCGAGAAGCAGGGACGTACAGT 58
Query 48676 CCTCGGCCAAGCCGAGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGA 48735
||| ||||| ||||| |||||| | |||||||||| || ||||| || || | |||||
Sbjct 59 CCTGGGCCAGGCCGAACAGGTAGCGTTCCGCGCCGGCGGATGGCAAAAGGCTCGGATGGA 118
Query 48736 ACAGCAGATGTATGAATGGTTCGGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGA 48795
|| |||||| ||| |||||||| | | ||| ||||||||||| || || || |
Sbjct 119 GCAACAGATGCGTGATTGGTTCGGCGACGTGCCGGCTTTCATCATCACTCTTGCTGCGAA 178
Query 48796 TTACTGCTCACAATGCAATGACCTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCA 48855
|||||| | ||||| | ||||| ||||||||||| ||| | ||||| |||||||| ||
Sbjct 179 CTACTGCGCCCAATGTAGCGACCTTGAGTTCTGCGCGCTGATCGAGCACGAGCTTTATCA 238
Query 48856 CATCGCACAGGCCACCGATGATTTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCATCC 48915
| | || || || ||||| | | ||| || |||| | | |||| | ||| ||
Sbjct 239 CCTGGCTCATGCGACCGACAAGTACGGTCAACCAGCATTCACCCA--AGACGGTGCA-CC 295
Query 48916 ATTGCTTACACTGCGCGGCCACGACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGG 48975
| | | |||| ||||||||||||||||| ||| | |||||||| || || |||||
Sbjct 296 GAAGATCAAGCTGCAGGGCCACGACGTCGAAGAGTTCGTCGGTGTCGTCCGCCGCTACGG 355
Query 48976 TGCCAGCAAAGAAGTACAGGAGCTTGTTGATGCGGCCAAAGCGCCAGCAGAAGTGGCTCA 49035
||| || || || || | | | || ||||| || || || || || |||| |
Sbjct 356 TGCGAGTCCCGACGTTCAAGCGTTGGTGGATGCTGCAAACAGTCCTGCTGAGGTGGGGAA 415
Query 49036 CATCGATATAGCCAGGTCATGCGGCACATGCATGTTAAAACTGGCCT 49082
| | || || ||| | ||||| || || || | || |||||||
Sbjct 416 ATTGAACATTGCGAGGGCCTGCGGAACCTGTCTGCTTAAGCTGGCCT 462
>seq3088211
Length=8104
Score = 181 bits (200), Expect = 3e-41
Identities = 241/332 (73%), Gaps = 2/332 (1%)
Strand=Plus/Minus
Query 48566 ATCCTCAGCGATACCGGCAGCATCCATAACCCTGACCACGAACACCTGTTAGAGGCTGAC 48625
||||| ||| ||||||||||| || ||| ||||| | || || | || || |||
Sbjct 1653 ATCCTTGCCGACACCGGCAGCATTCACAACGAAGACCATGCCCATCTACTGGATGCAGAC 1594
Query 48626 CTCTGCTTCATGTGGGCGTCCGATTCGTTCGCTAAGAAAGGGCGGTATGTCCTCGGCCAA 48685
|| | | ||||||||||| | |||| | | | || || || || ||||||
Sbjct 1593 ATCCGGGTTATGTGGGCGTCGTCGTGCTTCGAGAGGCAGGGCCGCACAGTTCTGGGCCAA 1534
Query 48686 GCCGAGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGATG 48745
|||||||||||| | |||||||||| ||||||||||| ||| | ||||| || ||||||
Sbjct 1533 GCCGAGCAGGTAGCGTTCCGCGCCGGCGGTTGGCAGAAGGCCCGGATGGAGCAACAGATG 1474
Query 48746 TATGAATGGTTCGGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCA 48805
||||||||| || | ||| ||||||||||| |||| || || |||||| |
Sbjct 1473 CGTGAATGGTTTGGCGATGTGCCGGCCTTCATCATCACCTTGGCCGCTGACTACTGCGCC 1414
Query 48806 CAATGCAATGACCTCGAGTTCT-GCGCACTGGTAGAGCATGAGCTTTACCACATCGCACA 48864
||||||| || | || || | ||| |||||| ||||||||||| || ||||| | ||
Sbjct 1413 CAATGCAGCGATGTAGATTTTTTGCG-ACTGGTTGAGCATGAGCTCTATCACATTTCCCA 1355
Query 48865 GGCCACCGATGATTTCGGAGCGCCTAAGTTCA 48896
||| || ||| | | |||||| || |||||||
Sbjct 1354 GGCGACAGATCAGTACGGAGCACCCAAGTTCA 1323
Score = 131 bits (144), Expect = 5e-26
Identities = 107/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 17 GTGAGGTCAAAGCCTTCATCGTTCAGTCTCTTGCCTGTTTCGATACTCCATCCCAGGTGG 76
||||||| || |||| | || ||| |||| || || |||||||| || || |||||||
Sbjct 473 GTGAGGTGAAGACCTTTGTAGTACAGGCTCTCGCTTGCTTCGATACGCCTTCTCAGGTGG 414
Query 77 TTGAGCTGGTCAAAAAAGAATTTGGCCTGAGCATCACACGTCAGCAGGTCGAATCCCACG 136
||||| |||| | || ||||| || |||||||||| ||||||||||||||||||||||
Sbjct 413 TTGAGGCGGTCCATAAGGAATTCAGCTTGAGCATCACCCGTCAGCAGGTCGAATCCCACG 354
Query 137 ACCCGACGAA 146
||||||||||
Sbjct 353 ACCCGACGAA 344
>seq3031070
Length=905
Score = 163 bits (180), Expect = 9e-36
Identities = 206/281 (73%), Gaps = 3/281 (1%)
Strand=Plus/Minus
Query 48702 TCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGATGTATGAATGGTTCGGGC 48761
|||||||||| ||||||||||||||| | ||||| || |||||| ||| ||||||||
Sbjct 899 TCCGCGCCGGCGGTTGGCAGAAAGCCCGGATGGAGCAACAGATGCGTGATTGGTTCGGCG 840
Query 48762 GCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCACAATGCAATGACCTCG 48821
| | ||| ||||||||||| ||||| ||||| |||||| | || |||| ||||| |
Sbjct 839 ACGTGCCGGCCTTCATCATCACCCTGGCGGCCGACTACTGCGCCCAGTGCAGCGACCTTG 780
Query 48822 AGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCACAGGCCACCGATGATTTCG 48881
|||||||||| ||| | || || ||||| || ||| | || || || ||||| | | ||
Sbjct 779 AGTTCTGCGCCCTGATCGAACACGAGCTGTATCACCTGGCTCATGCGACCGACAAGTACG 720
Query 48882 GAGCGCCTAAGTTCAACAAAGAGACCGGGCATCCATTGCTTACACTGCGCGGCCACGACG 48941
|| |||| | | |||| | ||| || | | | |||| ||||||||||
Sbjct 719 CTCAACCAGCATTCACCCA--AGACGGCGCA-CCGAAGATCAAGCTGCAGGGCCACGACG 663
Query 48942 TCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGCCAGC 48982
| ||||| ||| | |||||||| || || || ||||| |||
Sbjct 662 TTGAAGAGTTCGTCGGTGTCGTCCGCCGTTATGGTGCAAGC 622
Score = 127 bits (140), Expect = 6e-25
Identities = 227/329 (69%), Gaps = 2/329 (1%)
Strand=Plus/Minus
Query 17 GTGAGGTCAAAGCCTTCATCGTTCAGTCTCTTGCCTGTTTCGATACTCCATCCCAGGTGG 76
||||||| |||||||| || |||||| |||| || || || || || || || |||||||
Sbjct 473 GTGAGGTGAAAGCCTTTATTGTTCAGGCTCTCGCGTGCTTTGACACACCTTCTCAGGTGG 414
Query 77 TTGAGCTGGTCAAAAAAGAATTTGGCCTGAGCATCACACGTCAGCAGGTCGAATCCCACG 136
||||| |||| ||||||||| | | |||| ||||||||| |||||| ||||
Sbjct 413 TTGAGGCGGTCTTAAAAGAATTCAACGTTGTTGTCACTCGTCAGCAGTGCGAATCACACG 354
Query 137 ACCCGACGAAAGCAAACGGCAGGGGCCTGGCGCAGAAATGGGTGGACATGTTCAATGCCA 196
|||| || || ||| ||| | || |||| |||| |||| |||||| | |
Sbjct 353 ACCCAACAAAGGCAGCCGGTAAGGCGCTGGGCGAGAAGTGGGCAACGATGTTCCGAGAGA 294
Query 197 CCCGTAAACGATTCCAGAATGAGATCGCCGACATACCGATCGCGAACAAAGCGTACCGGT 256
||| || || |||| | |||| | ||||| |||||||| || ||| | |||
Sbjct 293 GCCGCAAGCGGTTCCGCGAAGAGACTGAAGACATCCCGATCGCCAATCGAGCCTTCCGAC 234
Query 257 TACGCGTTCTCGACCGAATGGCGACCAATGCTGAAAAGATGAAGAACTACGGC-ATGACC 315
| |||| || ||| ||||| || || ||| ||||||||| | ||| | ||
Sbjct 233 TGCGCGCCCTGAGCCGCATGGCTGAGAAAGCCGAAGGCATGAAGAAC-ATGGCGCTCACT 175
Query 316 TCGCAACTTATCGAGCAGGCCGCCAAAGA 344
| || || | |||||||| ||||||||
Sbjct 174 GCCCAGCTACTGGAGCAGGCTGCCAAAGA 146
>seq3083599
Length=2738
Score = 91.5 bits (100), Expect = 4e-14
Identities = 132/181 (73%), Gaps = 8/181 (4%)
Strand=Plus/Minus
Query 48556 AAGCCGCCAAATCCTCAGCGATACCGGCAGCATCCATAACCCTGACCACGAACACCTGTT 48615
|||||| | ||||| ||| ||||| ||||| || ||| ||||| | ||||| ||
Sbjct 176 AAGCCG--AGATCCTTGCCGACACCGGTAGCATTCACAACGAAGACCATGCCCACCTATT 119
Query 48616 AGAGGCTGACCTCTGCTTCATGTGGGCGTC--CGATTCGTTCGCTAAGAAAGGGCGGTAT 48673
|| || ||| || | | ||||||||||| ||| |||| ||| | |||| | |
Sbjct 118 GGATGCAGACATCCGGGTGATGTGGGCGTCATCGAGC--TTCGAGAAGCA-GGGCAGAAC 62
Query 48674 -GTCCTCGGCCAAGCCGAGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAAT 48732
|| || ||||| ||||| |||||| | |||||||||| ||||||||||||||| | ||
Sbjct 61 AGTTCTTGGCCAGGCCGAACAGGTAGCGTTCCGCGCCGGCGGTTGGCAGAAAGCCCGGAT 2
Query 48733 G 48733
|
Sbjct 1 G 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151289638171396
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |