Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq289766 190 6e-44 seq3088211 181 3e-41 seq3031070 163 9e-36 seq3083599 91.5 4e-14 >seq289766 Length=704 Score = 190 bits (210), Expect = 6e-44 Identities = 325/467 (70%), Gaps = 7/467 (1%) Strand=Plus/Plus Query 48618 AGGCTGACCTCTGCTTCATGTGGGCGTC--CGATTCGTTCGCTAAGAAAGGGCGGTATGT 48675 |||| ||| || | ||||||||||||| ||| |||| ||| | || || || Sbjct 1 AGGCAGACATCAGGGTCATGTGGGCGTCGTCGAGC--TTCGAGAAGCAGGGACGTACAGT 58 Query 48676 CCTCGGCCAAGCCGAGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGA 48735 ||| ||||| ||||| |||||| | |||||||||| || ||||| || || | ||||| Sbjct 59 CCTGGGCCAGGCCGAACAGGTAGCGTTCCGCGCCGGCGGATGGCAAAAGGCTCGGATGGA 118 Query 48736 ACAGCAGATGTATGAATGGTTCGGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGA 48795 || |||||| ||| |||||||| | | ||| ||||||||||| || || || | Sbjct 119 GCAACAGATGCGTGATTGGTTCGGCGACGTGCCGGCTTTCATCATCACTCTTGCTGCGAA 178 Query 48796 TTACTGCTCACAATGCAATGACCTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCA 48855 |||||| | ||||| | ||||| ||||||||||| ||| | ||||| |||||||| || Sbjct 179 CTACTGCGCCCAATGTAGCGACCTTGAGTTCTGCGCGCTGATCGAGCACGAGCTTTATCA 238 Query 48856 CATCGCACAGGCCACCGATGATTTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCATCC 48915 | | || || || ||||| | | ||| || |||| | | |||| | ||| || Sbjct 239 CCTGGCTCATGCGACCGACAAGTACGGTCAACCAGCATTCACCCA--AGACGGTGCA-CC 295 Query 48916 ATTGCTTACACTGCGCGGCCACGACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGG 48975 | | | |||| ||||||||||||||||| ||| | |||||||| || || ||||| Sbjct 296 GAAGATCAAGCTGCAGGGCCACGACGTCGAAGAGTTCGTCGGTGTCGTCCGCCGCTACGG 355 Query 48976 TGCCAGCAAAGAAGTACAGGAGCTTGTTGATGCGGCCAAAGCGCCAGCAGAAGTGGCTCA 49035 ||| || || || || | | | || ||||| || || || || || |||| | Sbjct 356 TGCGAGTCCCGACGTTCAAGCGTTGGTGGATGCTGCAAACAGTCCTGCTGAGGTGGGGAA 415 Query 49036 CATCGATATAGCCAGGTCATGCGGCACATGCATGTTAAAACTGGCCT 49082 | | || || ||| | ||||| || || || | || ||||||| Sbjct 416 ATTGAACATTGCGAGGGCCTGCGGAACCTGTCTGCTTAAGCTGGCCT 462 >seq3088211 Length=8104 Score = 181 bits (200), Expect = 3e-41 Identities = 241/332 (73%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 48566 ATCCTCAGCGATACCGGCAGCATCCATAACCCTGACCACGAACACCTGTTAGAGGCTGAC 48625 ||||| ||| ||||||||||| || ||| ||||| | || || | || || ||| Sbjct 1653 ATCCTTGCCGACACCGGCAGCATTCACAACGAAGACCATGCCCATCTACTGGATGCAGAC 1594 Query 48626 CTCTGCTTCATGTGGGCGTCCGATTCGTTCGCTAAGAAAGGGCGGTATGTCCTCGGCCAA 48685 || | | ||||||||||| | |||| | | | || || || || |||||| Sbjct 1593 ATCCGGGTTATGTGGGCGTCGTCGTGCTTCGAGAGGCAGGGCCGCACAGTTCTGGGCCAA 1534 Query 48686 GCCGAGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGATG 48745 |||||||||||| | |||||||||| ||||||||||| ||| | ||||| || |||||| Sbjct 1533 GCCGAGCAGGTAGCGTTCCGCGCCGGCGGTTGGCAGAAGGCCCGGATGGAGCAACAGATG 1474 Query 48746 TATGAATGGTTCGGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCA 48805 ||||||||| || | ||| ||||||||||| |||| || || |||||| | Sbjct 1473 CGTGAATGGTTTGGCGATGTGCCGGCCTTCATCATCACCTTGGCCGCTGACTACTGCGCC 1414 Query 48806 CAATGCAATGACCTCGAGTTCT-GCGCACTGGTAGAGCATGAGCTTTACCACATCGCACA 48864 ||||||| || | || || | ||| |||||| ||||||||||| || ||||| | || Sbjct 1413 CAATGCAGCGATGTAGATTTTTTGCG-ACTGGTTGAGCATGAGCTCTATCACATTTCCCA 1355 Query 48865 GGCCACCGATGATTTCGGAGCGCCTAAGTTCA 48896 ||| || ||| | | |||||| || ||||||| Sbjct 1354 GGCGACAGATCAGTACGGAGCACCCAAGTTCA 1323 Score = 131 bits (144), Expect = 5e-26 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 17 GTGAGGTCAAAGCCTTCATCGTTCAGTCTCTTGCCTGTTTCGATACTCCATCCCAGGTGG 76 ||||||| || |||| | || ||| |||| || || |||||||| || || ||||||| Sbjct 473 GTGAGGTGAAGACCTTTGTAGTACAGGCTCTCGCTTGCTTCGATACGCCTTCTCAGGTGG 414 Query 77 TTGAGCTGGTCAAAAAAGAATTTGGCCTGAGCATCACACGTCAGCAGGTCGAATCCCACG 136 ||||| |||| | || ||||| || |||||||||| |||||||||||||||||||||| Sbjct 413 TTGAGGCGGTCCATAAGGAATTCAGCTTGAGCATCACCCGTCAGCAGGTCGAATCCCACG 354 Query 137 ACCCGACGAA 146 |||||||||| Sbjct 353 ACCCGACGAA 344 >seq3031070 Length=905 Score = 163 bits (180), Expect = 9e-36 Identities = 206/281 (73%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 48702 TCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGATGTATGAATGGTTCGGGC 48761 |||||||||| ||||||||||||||| | ||||| || |||||| ||| |||||||| Sbjct 899 TCCGCGCCGGCGGTTGGCAGAAAGCCCGGATGGAGCAACAGATGCGTGATTGGTTCGGCG 840 Query 48762 GCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCACAATGCAATGACCTCG 48821 | | ||| ||||||||||| ||||| ||||| |||||| | || |||| ||||| | Sbjct 839 ACGTGCCGGCCTTCATCATCACCCTGGCGGCCGACTACTGCGCCCAGTGCAGCGACCTTG 780 Query 48822 AGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCACAGGCCACCGATGATTTCG 48881 |||||||||| ||| | || || ||||| || ||| | || || || ||||| | | || Sbjct 779 AGTTCTGCGCCCTGATCGAACACGAGCTGTATCACCTGGCTCATGCGACCGACAAGTACG 720 Query 48882 GAGCGCCTAAGTTCAACAAAGAGACCGGGCATCCATTGCTTACACTGCGCGGCCACGACG 48941 || |||| | | |||| | ||| || | | | |||| |||||||||| Sbjct 719 CTCAACCAGCATTCACCCA--AGACGGCGCA-CCGAAGATCAAGCTGCAGGGCCACGACG 663 Query 48942 TCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGCCAGC 48982 | ||||| ||| | |||||||| || || || ||||| ||| Sbjct 662 TTGAAGAGTTCGTCGGTGTCGTCCGCCGTTATGGTGCAAGC 622 Score = 127 bits (140), Expect = 6e-25 Identities = 227/329 (69%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 17 GTGAGGTCAAAGCCTTCATCGTTCAGTCTCTTGCCTGTTTCGATACTCCATCCCAGGTGG 76 ||||||| |||||||| || |||||| |||| || || || || || || || ||||||| Sbjct 473 GTGAGGTGAAAGCCTTTATTGTTCAGGCTCTCGCGTGCTTTGACACACCTTCTCAGGTGG 414 Query 77 TTGAGCTGGTCAAAAAAGAATTTGGCCTGAGCATCACACGTCAGCAGGTCGAATCCCACG 136 ||||| |||| ||||||||| | | |||| ||||||||| |||||| |||| Sbjct 413 TTGAGGCGGTCTTAAAAGAATTCAACGTTGTTGTCACTCGTCAGCAGTGCGAATCACACG 354 Query 137 ACCCGACGAAAGCAAACGGCAGGGGCCTGGCGCAGAAATGGGTGGACATGTTCAATGCCA 196 |||| || || ||| ||| | || |||| |||| |||| |||||| | | Sbjct 353 ACCCAACAAAGGCAGCCGGTAAGGCGCTGGGCGAGAAGTGGGCAACGATGTTCCGAGAGA 294 Query 197 CCCGTAAACGATTCCAGAATGAGATCGCCGACATACCGATCGCGAACAAAGCGTACCGGT 256 ||| || || |||| | |||| | ||||| |||||||| || ||| | ||| Sbjct 293 GCCGCAAGCGGTTCCGCGAAGAGACTGAAGACATCCCGATCGCCAATCGAGCCTTCCGAC 234 Query 257 TACGCGTTCTCGACCGAATGGCGACCAATGCTGAAAAGATGAAGAACTACGGC-ATGACC 315 | |||| || ||| ||||| || || ||| ||||||||| | ||| | || Sbjct 233 TGCGCGCCCTGAGCCGCATGGCTGAGAAAGCCGAAGGCATGAAGAAC-ATGGCGCTCACT 175 Query 316 TCGCAACTTATCGAGCAGGCCGCCAAAGA 344 | || || | |||||||| |||||||| Sbjct 174 GCCCAGCTACTGGAGCAGGCTGCCAAAGA 146 >seq3083599 Length=2738 Score = 91.5 bits (100), Expect = 4e-14 Identities = 132/181 (73%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 48556 AAGCCGCCAAATCCTCAGCGATACCGGCAGCATCCATAACCCTGACCACGAACACCTGTT 48615 |||||| | ||||| ||| ||||| ||||| || ||| ||||| | ||||| || Sbjct 176 AAGCCG--AGATCCTTGCCGACACCGGTAGCATTCACAACGAAGACCATGCCCACCTATT 119 Query 48616 AGAGGCTGACCTCTGCTTCATGTGGGCGTC--CGATTCGTTCGCTAAGAAAGGGCGGTAT 48673 || || ||| || | | ||||||||||| ||| |||| ||| | |||| | | Sbjct 118 GGATGCAGACATCCGGGTGATGTGGGCGTCATCGAGC--TTCGAGAAGCA-GGGCAGAAC 62 Query 48674 -GTCCTCGGCCAAGCCGAGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAAT 48732 || || ||||| ||||| |||||| | |||||||||| ||||||||||||||| | || Sbjct 61 AGTTCTTGGCCAGGCCGAACAGGTAGCGTTCCGCGCCGGCGGTTGGCAGAAAGCCCGGAT 2 Query 48733 G 48733 | Sbjct 1 G 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151289638171396