Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_018283.1
Length=58065
Score E
Sequences producing significant alignments: (Bits) Value
seq3088488 136 1e-27
>seq3088488
Length=17142
Score = 136 bits (150), Expect = 1e-27
Identities = 349/523 (67%), Gaps = 34/523 (7%)
Strand=Plus/Plus
Query 17994 CGCAAGATGGGGATCATCGGCAAGAGCCAGGAACGCGATCGGCGTCCGACCTTCGAAGAA 18053
|||||| |||| || | ||| |||| ||| || || || || ||||| || || ||
Sbjct 755 CGCAAGCTGGGCTACAACCTCAAAAGCCGGGAGCGTGACCGCCGGCCGACATTGGACGAG 814
Query 18054 CTCGACAAGCTGATGACGCATTTCCAGGAGC-GCAACCAC--CG-CCGCCCGTCGTCGAA 18109
|| | || | | ||||||| | ||||| ||| | | || || ||||| || |
Sbjct 815 CTGGGCAGGGTACTGACGCACTACCAGGCTATGCAGGCGCGTCGTCCAACCGTCATCAAT 874
Query 18110 CCCGATGCACTACGTCATCGGCTTTGCCATCTTCTCGACGCGGCGCATGGACGAGATCGC 18169
|||| | | ||| | |||||||| | ||||| || || || |||| || || |
Sbjct 875 ----ATGCTCAAGGTCGTGGGCTTTGCTTTGTTCTCCACACGCCGGCTGGATGAAATAAC 930
Query 18170 GCGCATCGCGTGGGACGACTACGACAAGGAAGGCAAGCGAGTCTTGGTCCGCGATATGAA 18229
|||||| |||| |||| |||| || ||| |||| || |||| |||||||||||
Sbjct 931 CCGCATCCGCTGGGCCGACGTCGACGAGCCTGGCCAGCGGGTGCTGGTGCGCGATATGAA 990
Query 18230 GAACCCCGGCGAGAAGGTCGGGAACGACGTGTGGTGCGATCTGGTGCCCGAGGCTATCGC 18289
|||||| ||| |||| |||| |||||||| |||||| | ||| ||| || | ||
Sbjct 991 GAACCCTGGCCAGAAAATCGGCAACGACGTTTGGTGCTACCTGCCAGACGAAGC-GTGGC 1049
Query 18290 -GATCATCGAGGCCATGCCGCGTGTCGCCGACCAAATCTTCCCCTACAGCCCCGACGCGA 18348
|||| || || |||||||| | | ||| | |||||||| |||||||| || | |
Sbjct 1050 AGATCCTCCAGACCATGCCGAAGGCGGGCGAGGACATCTTCCCTTACAGCCCTGAATCTA 1109
Query 18349 TGGGCGCGGCCTTCACGCGGGCGTGCTACCTGCTCGGCATCAACACGGAAGAGATGCCGG 18408
| | || ||| |||| | | || | ||| | |||| || |||
Sbjct 1110 TCTCCACGTCCT------GGGC---CAA--AGC-CTGCAAGTTCCTGGAA---ATTGCGG 1154
Query 18409 AAGAAAAGCGCCTGCACTTCCACGATCTGCGCCATGACGGCGTATCGCGTCTGTTCGAAA 18468
| |||||||||||||| || |||||||| ||||| || ||||| ||||
Sbjct 1155 A---------TCTGCACTTCCACGACCTTCGCCATGAAGGCGTCAGCCGCCTGTTTGAAA 1205
Query 18469 TGGGTTGGAACATCCCGCACGTCGCGGCCGTGTCCGGGCACCG 18511
||| ||| ||||||| | ||| ||| ||||| || |||||
Sbjct 1206 TGGACTGGGACATCCCACGCGTGGCGAGTGTGTCGGGCCACCG 1248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 178876152943714
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |