Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq3088488 136 1e-27 >seq3088488 Length=17142 Score = 136 bits (150), Expect = 1e-27 Identities = 349/523 (67%), Gaps = 34/523 (7%) Strand=Plus/Plus Query 17994 CGCAAGATGGGGATCATCGGCAAGAGCCAGGAACGCGATCGGCGTCCGACCTTCGAAGAA 18053 |||||| |||| || | ||| |||| ||| || || || || ||||| || || || Sbjct 755 CGCAAGCTGGGCTACAACCTCAAAAGCCGGGAGCGTGACCGCCGGCCGACATTGGACGAG 814 Query 18054 CTCGACAAGCTGATGACGCATTTCCAGGAGC-GCAACCAC--CG-CCGCCCGTCGTCGAA 18109 || | || | | ||||||| | ||||| ||| | | || || ||||| || | Sbjct 815 CTGGGCAGGGTACTGACGCACTACCAGGCTATGCAGGCGCGTCGTCCAACCGTCATCAAT 874 Query 18110 CCCGATGCACTACGTCATCGGCTTTGCCATCTTCTCGACGCGGCGCATGGACGAGATCGC 18169 |||| | | ||| | |||||||| | ||||| || || || |||| || || | Sbjct 875 ----ATGCTCAAGGTCGTGGGCTTTGCTTTGTTCTCCACACGCCGGCTGGATGAAATAAC 930 Query 18170 GCGCATCGCGTGGGACGACTACGACAAGGAAGGCAAGCGAGTCTTGGTCCGCGATATGAA 18229 |||||| |||| |||| |||| || ||| |||| || |||| ||||||||||| Sbjct 931 CCGCATCCGCTGGGCCGACGTCGACGAGCCTGGCCAGCGGGTGCTGGTGCGCGATATGAA 990 Query 18230 GAACCCCGGCGAGAAGGTCGGGAACGACGTGTGGTGCGATCTGGTGCCCGAGGCTATCGC 18289 |||||| ||| |||| |||| |||||||| |||||| | ||| ||| || | || Sbjct 991 GAACCCTGGCCAGAAAATCGGCAACGACGTTTGGTGCTACCTGCCAGACGAAGC-GTGGC 1049 Query 18290 -GATCATCGAGGCCATGCCGCGTGTCGCCGACCAAATCTTCCCCTACAGCCCCGACGCGA 18348 |||| || || |||||||| | | ||| | |||||||| |||||||| || | | Sbjct 1050 AGATCCTCCAGACCATGCCGAAGGCGGGCGAGGACATCTTCCCTTACAGCCCTGAATCTA 1109 Query 18349 TGGGCGCGGCCTTCACGCGGGCGTGCTACCTGCTCGGCATCAACACGGAAGAGATGCCGG 18408 | | || ||| |||| | | || | ||| | |||| || ||| Sbjct 1110 TCTCCACGTCCT------GGGC---CAA--AGC-CTGCAAGTTCCTGGAA---ATTGCGG 1154 Query 18409 AAGAAAAGCGCCTGCACTTCCACGATCTGCGCCATGACGGCGTATCGCGTCTGTTCGAAA 18468 | |||||||||||||| || |||||||| ||||| || ||||| |||| Sbjct 1155 A---------TCTGCACTTCCACGACCTTCGCCATGAAGGCGTCAGCCGCCTGTTTGAAA 1205 Query 18469 TGGGTTGGAACATCCCGCACGTCGCGGCCGTGTCCGGGCACCG 18511 ||| ||| ||||||| | ||| ||| ||||| || ||||| Sbjct 1206 TGGACTGGGACATCCCACGCGTGGCGAGTGTGTCGGGCCACCG 1248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 178876152943714