Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq3088488 161 4e-35 seq3088273 93.3 2e-14 >seq3088488 Length=17142 Score = 161 bits (178), Expect = 4e-35 Identities = 517/790 (65%), Gaps = 36/790 (5%) Strand=Plus/Plus Query 2791 ATGGTCAAGATCATCGCGTTCGCGATCTTCTCGACGCGGCGGCAGGAGGAGATCATCAGG 2850 ||| ||||| || | | || || | ||||| || || |||| ||| || || | | | Sbjct 875 ATGCTCAAGGTCGTGGGCTTTGCTTTGTTCTCCACACGCCGGCTGGATGAAATAACCCGC 934 Query 2851 ATCACGTGGGCCGACCTCAACGAGGA-GGAGAGCACGCAGATCGTGCGCGACGTGAAGCA 2909 ||| ||||||||| || ||||| || ||| | | | |||||||| ||||| | Sbjct 935 ATCCGCTGGGCCGACGTCGACGAGCCTGGCCAGCGGGT-GCTGGTGCGCGATATGAAGAA 993 Query 2910 CCCGCGCAAGAAGATCGGCAACGATCAGGAATCGCGGCTCACGCC---CGAGGCGCTGGC 2966 ||| || |||| ||||||||||| | | | | | ||| ||| ||| |||| Sbjct 994 CCCTGGCCAGAAAATCGGCAACGAC---GTTTGGTGCTACCTGCCAGACGAAGCG-TGGC 1049 Query 2967 -GATCATCAAATCGATGCCGCACACGCACGACCGCATCTTCCCGTACACGACCGACGCGA 3025 |||| || | | |||||| | || ||| ||||||||| |||| | || | | Sbjct 1050 AGATCCTCCAGACCATGCCGAAGGCGGGCGAGGACATCTTCCCTTACAGCCCTGAATCTA 1109 Query 3026 TCAGCGCGCAGTTCACGCGC----GCGTGCGACTGGCTCGAGATTGAGGACTTGCGGTTC 3081 || | || || | || || ||| | | || || |||| ||| ||| ||| Sbjct 1110 TCTCCACG----TCCTGGGCCAAAGCCTGCAAGTTCCTGGAAATTGCGGATCTGCACTTC 1165 Query 3082 CACGACCTGCGCCGGGCCGGCGTGACGCGCCTGTTCGAGATGGGCTGGAACATCCCCGAC 3141 |||||||| |||| | ||||| | |||||||| || |||| |||| ||||||| | Sbjct 1166 CACGACCTTCGCCATGAAGGCGTCAGCCGCCTGTTTGAAATGGACTGGGACATCCCACGC 1225 Query 3142 GTGGCGAAGGTCAGTCTG--CACCGCGACTGGAACATGCTGCGCCGGTACACCAACCTGA 3199 ||||||| || ||| | ||||| || ||||| || | || |||||| ||||| Sbjct 1226 GTGGCGAGTGT--GTCGGGCCACCGGGATTGGAATTCAATGAGGCGTTACACCCACCTGC 1283 Query 3200 AGGGCAAGGGCGATCGGTACGAGGGCTGGAAGTGG-ACGCA--GATCGCGAT--CGATCT 3254 |||||||| ||||| || | ||||||| | ||| ||| | ||| || || | Sbjct 1284 GCGGCAAGGGTGATCGTTATGTGGGCTGGGAATGGCACGAAAAGATACTGAGGGCGCCCG 1343 Query 3255 TCC---TGTCGCGCCNNNNNNNNNNNNNNNNNNGGGCGAGCAGGTCAGCGCGACCGT--A 3309 ||| || ||||| || || || | |||| | Sbjct 1344 TCCAACTGG-GCGCCGCATCAGAGAGGTGGCTTAAACG-GCGCGTTTTATC--CCGTTGA 1399 Query 3310 GCTGTTGCAGCTCCTTCGCCGCATCCTCGCGCCGCGCATCGAGATACGCGGCGAGGTCGG 3369 |||| | | |||||| | || | ||||| || ||||| || || |||||||||| Sbjct 1400 GCTGGTTGTGTTCCTTCACAGCGGCGGCGCGCTGCAAGTCGAGGTAGGCAGCGAGGTCGG 1459 Query 3370 CAAGGTGCACGCCCTTCGCGCACTTCTGCGAGCGCTCCATCCGCACGATCGGCAAAGTGA 3429 ||||| | ||| || || ||||||| |||||||||| ||| ||||| ||| Sbjct 1460 TGAGGTGGATGCCTTTAGCCGACTTCTGGCTCGGCTCCATCCGGGTGATGGGCAACTTGA 1519 Query 3430 TGTCGCCGTCGAGTACCTTCCGCTGGAGCTTTTCGGGAGACAGGTGCGCGAAGTAGTCGC 3489 | | ||| | ||||| ||||||| | | || || | |||||||| ||||||||| | Sbjct 1520 TCTGACCGCTCATCACCTTGCGCTGGAACATGTCCGGGGTCAGGTGCGTGAAGTAGTCCC 1579 Query 3490 GGCACACCAGATCGAGGGGGATGACGGCGCGACCGTCGTATTGCGCCATCAGAAGGAAAG 3549 |||||||||| || || | ||| | || | || |||||||| |||||||| | || | Sbjct 1580 GGCACACCAGCTCCAGCGAGATAATCGCCTGGCCATCGTATTGGGCCATCAGGATAAAGG 1639 Query 3550 CGGTGTTCAT 3559 | |||||||| Sbjct 1640 CTGTGTTCAT 1649 >seq3088273 Length=8614 Score = 93.3 bits (102), Expect = 2e-14 Identities = 278/425 (65%), Gaps = 16/425 (4%) Strand=Plus/Plus Query 24188 CCGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACGCTCATCTGCATCATCTG 24247 ||| ||| |||||||||| || |||||||| || ||||| ||||| | |||||| || Sbjct 3299 CCGGAACATCATCCTGAAAGCTCGCCAGCTGGGGTTTACGACGCTGGTGTGCATCGTCCA 3358 Query 24248 GCTCGACCACGCGCTGTTCAACGCCAACAGCCGGTGCGGCATCATCGCGCAGG-ACCGCG 24306 | | || ||| ||||| | || || ||||| | | ||||| || || | Sbjct 3359 GTTGGATGCAGCGTTGTTCGAGGCTGCCAA---GTGCGCCTTGATCGCTCACACACTGAA 3415 Query 24307 AGACGGCCGAGGCGATCTTTC-GCGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAG 24365 |||| ||| ||| |||| | || |||||||| | |||||||||||| ||||| || Sbjct 3416 CGACG--CGAAGCGCCTTTTCCGGGAAAAGGTGAAATACGCCTACGACAATCTGCCGAAG 3473 Query 24366 GCGCTGNNNNNNNNNATGCCGCTCGCC-AACTGCACGAAGTCTGAGATGTTGTTCGGCCA 24424 | ||| | ||| ||| ||| | || ||| || ||||| || Sbjct 3474 GAGCTTCGCGCTGCCAACCCGG-CGCGGAACGACGCGGCCGGCGAGCTGGTGTTCAGC-- 3530 Query 24425 CANNNNNNNNNNNNTCCGCGTCGCGACGTCCGTGCGCGGCGGCACGATCCACCGCCTGCA 24484 | | ||| | || || | || ||||||||| | | | |||||| Sbjct 3531 -AAGGGCGGTTCGCTTTACGTTTCCACCTCGTTCCGTGGCGGCACGCTGCGCTACCTGCA 3589 Query 24485 CATCTCCGAGTTCGGAAAGATCTGTGCGAAGTACCCGGACAAGGCCAAGGAGGTCGTGAC 24544 | | ||||||||||| |||||||| || |||| ||| ||||||| |||| |||| || Sbjct 3590 CGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGGGAGATCGTCAC 3649 Query 24545 CGGCTCCATCCCGGCCGT-GCCGAAGTCGGGCATTC-TGGTCATCGAGTCGACGGCCGAG 24602 |||| || || ||| || |||| | | ||| | ||||||||||||||| || Sbjct 3650 CGGCGCCTTCGAGGCTGTCGCCGCTGAATG--TTTCGTCACCATCGAGTCGACGGCAGAA 3707 Query 24603 GGCCG 24607 ||||| Sbjct 3708 GGCCG 3712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190534684496838