Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_018452.1
Length=61847
Score E
Sequences producing significant alignments: (Bits) Value
seq3088488 161 4e-35
seq3088273 93.3 2e-14
>seq3088488
Length=17142
Score = 161 bits (178), Expect = 4e-35
Identities = 517/790 (65%), Gaps = 36/790 (5%)
Strand=Plus/Plus
Query 2791 ATGGTCAAGATCATCGCGTTCGCGATCTTCTCGACGCGGCGGCAGGAGGAGATCATCAGG 2850
||| ||||| || | | || || | ||||| || || |||| ||| || || | | |
Sbjct 875 ATGCTCAAGGTCGTGGGCTTTGCTTTGTTCTCCACACGCCGGCTGGATGAAATAACCCGC 934
Query 2851 ATCACGTGGGCCGACCTCAACGAGGA-GGAGAGCACGCAGATCGTGCGCGACGTGAAGCA 2909
||| ||||||||| || ||||| || ||| | | | |||||||| ||||| |
Sbjct 935 ATCCGCTGGGCCGACGTCGACGAGCCTGGCCAGCGGGT-GCTGGTGCGCGATATGAAGAA 993
Query 2910 CCCGCGCAAGAAGATCGGCAACGATCAGGAATCGCGGCTCACGCC---CGAGGCGCTGGC 2966
||| || |||| ||||||||||| | | | | | ||| ||| ||| ||||
Sbjct 994 CCCTGGCCAGAAAATCGGCAACGAC---GTTTGGTGCTACCTGCCAGACGAAGCG-TGGC 1049
Query 2967 -GATCATCAAATCGATGCCGCACACGCACGACCGCATCTTCCCGTACACGACCGACGCGA 3025
|||| || | | |||||| | || ||| ||||||||| |||| | || | |
Sbjct 1050 AGATCCTCCAGACCATGCCGAAGGCGGGCGAGGACATCTTCCCTTACAGCCCTGAATCTA 1109
Query 3026 TCAGCGCGCAGTTCACGCGC----GCGTGCGACTGGCTCGAGATTGAGGACTTGCGGTTC 3081
|| | || || | || || ||| | | || || |||| ||| ||| |||
Sbjct 1110 TCTCCACG----TCCTGGGCCAAAGCCTGCAAGTTCCTGGAAATTGCGGATCTGCACTTC 1165
Query 3082 CACGACCTGCGCCGGGCCGGCGTGACGCGCCTGTTCGAGATGGGCTGGAACATCCCCGAC 3141
|||||||| |||| | ||||| | |||||||| || |||| |||| ||||||| |
Sbjct 1166 CACGACCTTCGCCATGAAGGCGTCAGCCGCCTGTTTGAAATGGACTGGGACATCCCACGC 1225
Query 3142 GTGGCGAAGGTCAGTCTG--CACCGCGACTGGAACATGCTGCGCCGGTACACCAACCTGA 3199
||||||| || ||| | ||||| || ||||| || | || |||||| |||||
Sbjct 1226 GTGGCGAGTGT--GTCGGGCCACCGGGATTGGAATTCAATGAGGCGTTACACCCACCTGC 1283
Query 3200 AGGGCAAGGGCGATCGGTACGAGGGCTGGAAGTGG-ACGCA--GATCGCGAT--CGATCT 3254
|||||||| ||||| || | ||||||| | ||| ||| | ||| || || |
Sbjct 1284 GCGGCAAGGGTGATCGTTATGTGGGCTGGGAATGGCACGAAAAGATACTGAGGGCGCCCG 1343
Query 3255 TCC---TGTCGCGCCNNNNNNNNNNNNNNNNNNGGGCGAGCAGGTCAGCGCGACCGT--A 3309
||| || ||||| || || || | |||| |
Sbjct 1344 TCCAACTGG-GCGCCGCATCAGAGAGGTGGCTTAAACG-GCGCGTTTTATC--CCGTTGA 1399
Query 3310 GCTGTTGCAGCTCCTTCGCCGCATCCTCGCGCCGCGCATCGAGATACGCGGCGAGGTCGG 3369
|||| | | |||||| | || | ||||| || ||||| || || ||||||||||
Sbjct 1400 GCTGGTTGTGTTCCTTCACAGCGGCGGCGCGCTGCAAGTCGAGGTAGGCAGCGAGGTCGG 1459
Query 3370 CAAGGTGCACGCCCTTCGCGCACTTCTGCGAGCGCTCCATCCGCACGATCGGCAAAGTGA 3429
||||| | ||| || || ||||||| |||||||||| ||| ||||| |||
Sbjct 1460 TGAGGTGGATGCCTTTAGCCGACTTCTGGCTCGGCTCCATCCGGGTGATGGGCAACTTGA 1519
Query 3430 TGTCGCCGTCGAGTACCTTCCGCTGGAGCTTTTCGGGAGACAGGTGCGCGAAGTAGTCGC 3489
| | ||| | ||||| ||||||| | | || || | |||||||| ||||||||| |
Sbjct 1520 TCTGACCGCTCATCACCTTGCGCTGGAACATGTCCGGGGTCAGGTGCGTGAAGTAGTCCC 1579
Query 3490 GGCACACCAGATCGAGGGGGATGACGGCGCGACCGTCGTATTGCGCCATCAGAAGGAAAG 3549
|||||||||| || || | ||| | || | || |||||||| |||||||| | || |
Sbjct 1580 GGCACACCAGCTCCAGCGAGATAATCGCCTGGCCATCGTATTGGGCCATCAGGATAAAGG 1639
Query 3550 CGGTGTTCAT 3559
| ||||||||
Sbjct 1640 CTGTGTTCAT 1649
>seq3088273
Length=8614
Score = 93.3 bits (102), Expect = 2e-14
Identities = 278/425 (65%), Gaps = 16/425 (4%)
Strand=Plus/Plus
Query 24188 CCGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACGCTCATCTGCATCATCTG 24247
||| ||| |||||||||| || |||||||| || ||||| ||||| | |||||| ||
Sbjct 3299 CCGGAACATCATCCTGAAAGCTCGCCAGCTGGGGTTTACGACGCTGGTGTGCATCGTCCA 3358
Query 24248 GCTCGACCACGCGCTGTTCAACGCCAACAGCCGGTGCGGCATCATCGCGCAGG-ACCGCG 24306
| | || ||| ||||| | || || ||||| | | ||||| || || |
Sbjct 3359 GTTGGATGCAGCGTTGTTCGAGGCTGCCAA---GTGCGCCTTGATCGCTCACACACTGAA 3415
Query 24307 AGACGGCCGAGGCGATCTTTC-GCGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAG 24365
|||| ||| ||| |||| | || |||||||| | |||||||||||| ||||| ||
Sbjct 3416 CGACG--CGAAGCGCCTTTTCCGGGAAAAGGTGAAATACGCCTACGACAATCTGCCGAAG 3473
Query 24366 GCGCTGNNNNNNNNNATGCCGCTCGCC-AACTGCACGAAGTCTGAGATGTTGTTCGGCCA 24424
| ||| | ||| ||| ||| | || ||| || ||||| ||
Sbjct 3474 GAGCTTCGCGCTGCCAACCCGG-CGCGGAACGACGCGGCCGGCGAGCTGGTGTTCAGC-- 3530
Query 24425 CANNNNNNNNNNNNTCCGCGTCGCGACGTCCGTGCGCGGCGGCACGATCCACCGCCTGCA 24484
| | ||| | || || | || ||||||||| | | | ||||||
Sbjct 3531 -AAGGGCGGTTCGCTTTACGTTTCCACCTCGTTCCGTGGCGGCACGCTGCGCTACCTGCA 3589
Query 24485 CATCTCCGAGTTCGGAAAGATCTGTGCGAAGTACCCGGACAAGGCCAAGGAGGTCGTGAC 24544
| | ||||||||||| |||||||| || |||| ||| ||||||| |||| |||| ||
Sbjct 3590 CGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGGGAGATCGTCAC 3649
Query 24545 CGGCTCCATCCCGGCCGT-GCCGAAGTCGGGCATTC-TGGTCATCGAGTCGACGGCCGAG 24602
|||| || || ||| || |||| | | ||| | ||||||||||||||| ||
Sbjct 3650 CGGCGCCTTCGAGGCTGTCGCCGCTGAATG--TTTCGTCACCATCGAGTCGACGGCAGAA 3707
Query 24603 GGCCG 24607
|||||
Sbjct 3708 GGCCG 3712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190534684496838
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