Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq3088273 753 0.0 seq295506 374 2e-99 seq3043706 159 9e-35 seq3088057 120 7e-23 seq277625 109 1e-19 seq3088451 100 7e-17 seq3084832 96.9 9e-16 seq3086781 91.5 4e-14 seq347631 91.5 4e-14 >seq3088273 Length=8614 Score = 753 bits (834), Expect = 0.0 Identities = 1064/1488 (72%), Gaps = 29/1488 (2%) Strand=Plus/Plus Query 17506 TGATGGATGAGCTTTCAGGGGGTGCCTGATGGCGCTTAGACCTGAACACCTCGCACGGCT 17565 ||||||| || || ||| || ||||||| | | ||| || ||| | | ||| Sbjct 3129 TGATGGACGAACTATCACAGGACGCCTGATA----TGAAACCCGAGCACATGAAGCTGCT 3184 Query 17566 AAGGGATAAATTCTGGCGGCTTAACCACCTGTACTGGATCACCGACAAACGCGGGAAGCC 17625 ||||| |||||||| || || | || |||| ||||||||||| | || ||| Sbjct 3185 TCGGGATCGGTTCTGGCGACTGAATAATCTCTACTTCATCACCGACAAGCAGGGAAAGAA 3244 Query 17626 GGTACGTTTCAAAATGACCCCGGAGCAGTTGGCCTACTTCGAGGGGATGCATACACGAAA 17685 ||| || ||| ||||| | ||||||| | | |||||| ||||||||||||| || || Sbjct 3245 GGTTCGCTTCCGCATGACGCAGGAGCAGATCGATTACTTCCAGGGGATGCATACCCGGAA 3304 Query 17686 CATCATCCTGAAAGCGCGCCAGCTCGGTTTTACAACGCTGGTGTGCATCATTCAGCTCGA 17745 ||||||||||||||| |||||||| || ||||| ||||||||||||||| | ||| | || Sbjct 3305 CATCATCCTGAAAGCTCGCCAGCTGGGGTTTACGACGCTGGTGTGCATCGTCCAGTTGGA 3364 Query 17746 TGCCGCGCTCTTTGAGGGCGCAAAGTGCGCGCTTATCGCTCACACCCTCAATGACGCAAA 17805 ||| ||| | || |||| || |||||||| | ||||||||||| || || ||||| || Sbjct 3365 TGCAGCGTTGTTCGAGGCTGCCAAGTGCGCCTTGATCGCTCACACACTGAACGACGCGAA 3424 Query 17806 GCGCCTTTTCCGGGAGAAAATCAAATATGCCTATGATCGACTGCCTGCTGAGATCCGGGC 17865 ||||||||||||||| || | ||||| ||||| || ||||| ||| | || || Sbjct 3425 GCGCCTTTTCCGGGAAAAGGTGAAATACGCCTACGACAATCTGCCGAAGGAGCTTCGCGC 3484 Query 17866 GGCTAATCCTGCGTCTAATGATGCCGCTGGCGAGCTGGTTTTTAAGAAGGGCGGCTCGCT 17925 || || || ||| || || || || ||||||||||| || | |||||||| ||||| Sbjct 3485 TGCCAACCCGGCGCGGAACGACGCGGCCGGCGAGCTGGTGTTCAGCAAGGGCGGTTCGCT 3544 Query 17926 CTATGTTTCGACATCGTTTCGTGGCGGCACGCTGCGCTATCTTCATGTGTCCGAGTTCGG 17985 || ||||| || ||||| |||||||||||||||||||| || || || ||||||||||| Sbjct 3545 TTACGTTTCCACCTCGTTCCGTGGCGGCACGCTGCGCTACCTGCACGTATCCGAGTTCGG 3604 Query 17986 GAAGATCTGCGCAAAGTACCCGGACAAGGCGCGCGAAATTGTCACTGGTGCTTTTGAAGC 18045 |||||||||||| |||| ||| |||||||||| || || ||||| || || || || || Sbjct 3605 GAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGGGAGATCGTCACCGGCGCCTTCGAGGC 3664 Query 18046 TGTTTCAACTGACTGTTTCACGACGATTGAAAGCACAGCAGAAGGCCGCGCGGGCTATTT 18105 ||| | |||| |||||| || || || || ||||||||||| || || ||||| Sbjct 3665 TGTCGCCGCTGAATGTTTCGTCACCATCGAGTCGACGGCAGAAGGCCGGGCCGGGTATTT 3724 Query 18106 CTTCGATTATTGCCAGACTGCGGAAAAAGCGGC----GCTATCTGGTGCGCCCCTCTCTC 18161 ||| || || | ||| | || | |||| | || |||||| ||| || | Sbjct 3725 CTTTGACTACAGTCAGTCAGC----AGAGCGCCAGCAACTGGCTGGTGTGCCACTGGGGC 3780 Query 18162 AACTGAGCTGGAAATTCTTCTTTTTCAGCTGGTGGATGAA-----CCCCCAGTATGCAAT 18216 || |||||| ||||| || ||||||||||||| || || ||| | | | Sbjct 3781 TGCTCGACTGGAAGTTCTTTTTCTTCAGCTGGTGGAACAACAAGGCCTACAGCCTTGATT 3840 Query 18217 CGACC-CCGTAGAGCCGCTATCACAGCGCCTGCGCGATTATTTCGATGAGCTGGAGGCAA 18275 ||||| ||| | || || | ||||||||| ||| || ||| | ||| || || | Sbjct 3841 CGACCGACGTGGTGCTGC---CGCAGCGCCTGACCGACTACTTCAACGAGTTGTTCGCCA 3897 Query 18276 AGCACCGCCT-TACGCTCAACGACCGCCAGAAAGCGTGGTATCAGGCCAAAGAAACCACC 18334 |||| || | || | || | ||||| || ||||| ||||| || | || Sbjct 3898 AGCATGGCATCGACAC-CAGCCCGGGCCAGCGCGCCTGGTACGCCGCCAAGGAGAAGACA 3956 Query 18335 CTCGGCGACGACATGAAACGGGAATACCCGTCTATCCCCGCCGAGGCGTTCCAGCAGTCC 18394 ||||||||||||||||| ||||| |||||||| ||||||| ||| || ||||||||||| Sbjct 3957 CTCGGCGACGACATGAAGCGGGAGTACCCGTCGATCCCCGTCGAAGCCTTCCAGCAGTCG 4016 Query 18395 GTTGAAGGCGCTTACTACGCGAAACAGTTCGCGTTTCTCTA---CGCACAGCGCCGCATC 18451 || || |||||||||||||| | |||||| | || || ||| ||| |||||| Sbjct 4017 GTCGAGGGCGCTTACTACGCCCAGCAGTTCACCAAGCTGTATGCCGCTCAG---CGCATC 4073 Query 18452 GGCCAGTTGCCGGATAACGATCACCTTCCTGTTTACACGTTCTGGGATATCGGCGTCGGT 18511 ||| |||| || ||| ||||| || || || | ||||| |||||||| | Sbjct 4074 GGCACTCTGCCCGACAACAGCCACCTGCCGGTGATGACCATTTGGGACATCGGCGTGAGC 4133 Query 18512 GACTCAACGGCTATCTGGTTTGTGCGCGTGGTGGGGAACGAGTTCCACATCATCGACTAC 18571 ||||| || || || ||||| |||||| ||| || | ||| ||| ||||||| ||| Sbjct 4134 GACTCCACCGCCATTTGGTTCGTGCGCCAGGTTGGCGAGCAGTATCACGTCATCGATTAC 4193 Query 18572 TACGAGAACAGCGGCGAAGGGCTTCGCCATTACATGAAGATCCTTAAAGAAAAGGGATAC 18631 ||||||||| |||||||| || || |||||||||||| | || || || ||||| ||| Sbjct 4194 TACGAGAACTCAGGCGAAGGCCTGCGGCATTACATGAAGGTGCTCAAGGACAAGGGTTAC 4253 Query 18632 ACCTACGCCGAACACTGGGCGCCCCACGATATAGACAACCGCGAGTTTGCGAACGACGGC 18691 |||||| |||| ||||||| ||| || || || || ||||| ||||| | | || | Sbjct 4254 ACCTACTCCGAGCACTGGGGGCCGCATGACATTGAGAACCGTGAGTTCGGTAGTGATGCG 4313 Query 18692 AAATCCCGCCGCCAGCTTGCGCGTGAGGGTTATGAGGTGGACGGCGAAATCTATTCGATC 18751 || | ||| | | || || |||||||| ||| | || ||| | | || ||| Sbjct 4314 AAGACGCGCAAGGACATCGCCCGAGAGGGTTACGAGATCGATGGCCAGGTTTACCGGATG 4373 Query 18752 TCGTTCAGTGTGGTGCCGAAGCTCGGTGTTGCTGAGGGGATCGAGCTGGTGCGCGAAATC 18811 ||||| || || |||||| |||| || | || || ||||||| || |||||||| Sbjct 4374 ACGTTCCAGGTTGTCCCGAAGATCGGGGTGGACGACGGTATCGAGCAGGCCCGCGAAATT 4433 Query 18812 CTGCCCCGCTGCGCTTTTGACAGCGTGAAATGCGAGGAAGGGATAAGCCACCTGGAAGCC 18871 ||| || ||||| || ||| ||| ||||| || || || | ||| || | Sbjct 4434 CTGTCCAAGTGCGCCTTCGACGAATCGAAGTGCGAAGAGGGCATTGCCTGCCTTGAGAAC 4493 Query 18872 TACCGCAAGGAGTGGGATGCCAAGCGCGGCTGCTGGAAAGACAACCCTTTGCACGACTAC 18931 || |||||||||||||| | |||| ||||||||||||||||| || |||| || | Sbjct 4494 TATCGCAAGGAGTGGGACGACAAGAAGGGCTGCTGGAAAGACAAGCCGCTGCATGATTGG 4553 Query 18932 ACCTCGCACGCTTCGGACGGTTTCCGCTACTTCGCTGTAGCGATGAGC 18979 || || |||| || || | ||||| ||||||||||| || | |||| Sbjct 4554 ACGTCTCACGGCTCCGATGCATTCCGGTACTTCGCTGTCGCCAAGAGC 4601 >seq295506 Length=3618 Score = 374 bits (414), Expect = 2e-99 Identities = 519/723 (72%), Gaps = 8/723 (1%) Strand=Plus/Minus Query 18254 TATTTCGATGAGCTGGAGGCAAAGCACCGCCTTACGCTCAACGACC---GCCAGAAAGCG 18310 || ||||| ||||||| || |||||| | || ||| ||| ||||| || Sbjct 1022 TACTTCGAAGAGCTGGCAGCCAAGCACGGGATTG---TCACGAACCCAGGCCAGCGCGCC 966 Query 18311 TGGTATCAGGCCAAAGAAACCACCCTCGGCGACGACATGAAACGGGAATACCCGTCTATC 18370 ||||| ||||| || | || ||||||||||||||||| |||||||||||||| ||| Sbjct 965 TGGTACGCAGCCAAGGAGAAGACGCTCGGCGACGACATGAAGCGGGAATACCCGTCGATC 906 Query 18371 CCCGCCGAGGCGTTCCAGCAGTCCGTTGAAGGCGCTTACTACGCGAAACAGTTCGCGTTT 18430 |||| |||||| ||||||||||| | |||||||| |||||||| | |||||| | Sbjct 905 CCCGTCGAGGCCTTCCAGCAGTCAATCGAAGGCGCCTACTACGCCAGGCAGTTCACAAAG 846 Query 18431 CTCTACGCACAGCGCCGCATCGGCCAGTTGCCGGATAACGATCACCTTCCTGTTTACACG 18490 |||||||| | |||||||| | ||||||| ||| |||| || || || Sbjct 845 CTCTACGCCTCCCAGCGCATCGGTGTGCTGCCGGACAACAGCCACCAGCCGGTGATGACC 786 Query 18491 TTCTGGGATATCGGCGTCGGTGACTCAACGGCTATCTGGTTTGTGCGCGTGGTGGGGAAC 18550 || ||||| ||||||||||| ||||||||||| || ||||| ||||| ||| || | | Sbjct 785 TTTTGGGACATCGGCGTCGGCGACTCAACGGCCATTTGGTTCGTGCGTCAGGTCGGCACC 726 Query 18551 GAGTTCCACATCATCGACTACTACGAGAACAGCGGCGAAGGGCTTCGCCATTACATGAAG 18610 ||||| ||| ||||||||| |||| |||||||||||||||| || || || ||||||||| Sbjct 725 GAGTTTCACGTCATCGACTTCTACCAGAACAGCGGCGAAGGCCTGCGGCACTACATGAAG 666 Query 18611 ATCCTTAAAGAAAAGGGATACACCTACGCCGAACACTGGGCGCCCCACGATATAGACAAC 18670 | || || || || ||| ||| |||| ||||||| ||| ||||| || |||||| Sbjct 665 GTGCTGAAGGATCGTGGCTACGGGTACTCCGAGCACTGGGGGCCGCACGACATCGACAAC 606 Query 18671 CGCGAGTTTGCGAACGACGGCAAATCCCGCCGCCAGCTTGCGCGTGAGGGTTATGAGGTG 18730 |||||||| | || | ||| || | || | | || |||||||| || ||| | Sbjct 605 CGCGAGTTCAGCAGTGATGCCAAGACCAGACGGGAAATGGCCCGTGAGGGCTACGAGATC 546 Query 18731 GACGGCGAAATCTATTCGAT-CTCGTTCAGTGTGGTGCCGAAGCTCGGTGTTGCTGAGGG 18789 |||||| | ||| || | ||||| |||||||| ||| |||| || | || || Sbjct 545 GACGGCCAGCACTACCGCATGACCTTTCAG-GTGGTGCCCAAGATCGGCGTAGACGACGG 487 Query 18790 GATCGAGCTGGTGCGCGAAATCCTGCCCCGCTGCGCTTTTGACAGCGTGAAATGCGAGGA 18849 ||||| | || ||| || ||||| ||| ||||| || || || ||||| || Sbjct 486 CATCGACCAGGCGCGGGAGATCCTTGCCCATTGCGCATTCGATGAATCCAAGTGCGAAGA 427 Query 18850 AGGGATAAGCCACCTGGAAGCCTACCGCAAGGAGTGGGATGCCAAGCGCGGCTGCTGGAA 18909 || || | | |||||| |||||||||||||||||| | |||| ||||||||||| Sbjct 426 GGGCATCACCGCCCTGGAGAACTACCGCAAGGAGTGGGACGACAAGAAGGGCTGCTGGAA 367 Query 18910 AGACAACCCTTTGCACGACTACACCTCGCACGCTTCGGACGGTTTCCGCTACTTCGCTGT 18969 |||| || | ||||||| | || ||| | | || | |||||||||||||| || Sbjct 366 AGACCGGCCGCTTCACGACTGGGCATCCCACCCGGCTGATGCCTTCCGCTACTTCGCGGT 307 Query 18970 AGC 18972 || Sbjct 306 GGC 304 Score = 181 bits (200), Expect = 3e-41 Identities = 229/312 (73%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 17568 GGGATAAATTCTGGCGGCTTAACCACCTGTACTGGATCACCGACAAACGCGGGAAGCCGG 17627 |||| |||| |||||| || ||| |||| |||| ||||| ||||| | || ||| || Sbjct 1667 GGGACAAATACTGGCGCCTGAACAACCTCTACTTCATCACGGACAAGCAGGGCAAGAAGG 1608 Query 17628 TACGTTTCAAAATGACCCCGGAGCAGTTGGCCTACTTCGAGGGGATGCATACACGAAACA 17687 | || ||| ||||| |||||| | | ||||||||||||||||| || || ||| Sbjct 1607 TCCGCTTCCGGATGACGGACGAGCAGATTGAATACTTCGAGGGGATGCACACTCGCAACC 1548 Query 17688 TCATCCTGAAAGCGCGCCAGCTCGGTTTTACAACGCTGGTG-TGCATCATTCAGCTCGAT 17746 | ||| |||| || | ||||| || ||||| || | ||| |||||||| || || || Sbjct 1547 TGATCTTGAAGGCCAGGCAGCTTGGCTTTACCAC-CGAGTGCTGCATCATCCAACTGGAC 1489 Query 17747 GCCGCGCTCTTTGAGGGCGCAAAGTGCGCGCTTATCGCTCACACCCTCAATGACGCAAAG 17806 || || || || ||| || |||||||| || ||||| |||||||| || ||||| ||| Sbjct 1488 GCGGCTCTATTCGAGTCAGCCAAGTGCGCCCTGATCGCCCACACCCTGAACGACGCCAAG 1429 Query 17807 CGCCTTTTCCGGGAGAAAATCAAATATGCCTATGATCGACTGCCTGCTGAGATCCGGGCG 17866 ||||| ||||||||||| | || || ||||| || ||||| |||||||| || Sbjct 1428 CGCCTGTTCCGGGAGAAGGTGAAGTACGCCTACGACAATCTGCCGAAAGAGATCCGCGCC 1369 Query 17867 GCTAATCCTGCG 17878 || || || ||| Sbjct 1368 GCGAACCCCGCG 1357 Score = 140 bits (154), Expect = 8e-29 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 17894 GGCGAGCTGGTTTTTAAGAAGGGCGGCTCGCTCTATGTTTCGACATCGTTTCGTGGCGGC 17953 || ||| |||| || | |||||||||||| |||| || || || || || || ||| Sbjct 1289 GGTGAGTTGGTATTCAGCAAGGGCGGCTCGATCTACGTCAGCACCTCCTTCCGGGGTGGC 1230 Query 17954 ACGCTGCGCTATCTTCATGTGTCCGAGTTCGGGAAGATCTGCGCAAAGTACCCGGACAAG 18013 |||||||| || || || || ||||||||||||||||||||||| |||| || ||||| Sbjct 1229 ACGCTGCGTTACCTGCACGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCCCACAAG 1170 Query 18014 GCGCGCGAAATTGTCACTGGTGCTTTTGAAGCTGTTTCAACTGACTGTTTCACGACGATT 18073 || || || || ||||| || || || || ||||| | || || |||||| |||||| Sbjct 1169 GCCCGAGAGATCGTCACCGGCGCCTTCGAGGCTGTCGCCACCGATTGTTTCGTCACGATT 1110 Query 18074 GAAAGCACAGCAGAAGGCCGCGCGGGC 18100 ||| || || || || || |||||| Sbjct 1109 GAATCGACGGCGGAGGGGCGGGCGGGC 1083 >seq3043706 Length=1055 Score = 159 bits (176), Expect = 9e-35 Identities = 391/585 (67%), Gaps = 12/585 (2%) Strand=Plus/Plus Query 33198 AACGGCGACATGGTGGGCTACACGCTGGAATACGTGGTTGAAATGCAGGTTGACGGCGGG 33257 |||||||||| |||||||| || |||||| | | || || |||||||| Sbjct 477 AACGGCGACACCAACGGCTACACCGTGCAATACGCGATCGATCTGTCCACCGACGGCGGC 536 Query 33258 AGCTGGCAGCAGGTGCTGAAAACGGCGGTATCCGGCAAAACCACCAGCGGCTACGAGCGG 33317 || ||| |||||| | ||| | |||||||||||||| | |||||||| Sbjct 537 GCCTTCGTGCAAGTGCTGGCGGCCGCGTTCAGCGGCAAAACCACCACCAAATACGAGCGC 596 Query 33318 AGCCACCGCATTGATTTACCGGCCGGTAAAACG----TGGAACCTTCGCCTGCGCAGGCT 33373 ||||| | || | ||| |||| |||| | |||| ||| ||| ||||| || | Sbjct 597 TCGCACCGTGTGGACCTGCCG-CCGGCAAAAAGCGGCTGGACCCTGCGCGTGCGCCGGAT 655 Query 33374 CACCCCGAACGCGAACAGCGCACGCATCGGCGACACCATGATGCTGGAAAGCTACACCAC 33433 ||| |||||| | | ||| | || | ||| |||| | ||||| || ||| Sbjct 656 CACGCCGAACTCCACCAGTGGTGCGATTGCCGATACCACCACCGTGGAATCCTCTACCGA 715 Query 33434 CATTATTGACGCGAAGCTGCGCTATCCGAACACCGCCTTACTCTACATGGAATTTGATTC 33493 | |||||||| || |||||||| || | || || || | || |||| ||| | Sbjct 716 AGTGATTGACGCCAAACTGCGCTACCCAGGTTCGGCGTTGATCGGCCTGCAATTCGATGC 775 Query 33494 GAGC-CAGTTTAACGGCTCTATTCCGCAAATCTCCTGCGAGCCGCGCGGGCGTGTCATTC 33552 ||| || ||| | || |||||| ||||| ||| | |||||| || |||| Sbjct 776 -AGCGCAATTTCAA---TCAATTCCGTCGCGCTCCTTCGAACTGCGCGGCCGCATCATCA 831 Query 33553 GCGTTCCTGCGAACTATGACCCCGACACCCGCAGCTATACCGGCACCTGGGATGGCACGT 33612 || || ||||| ||||| | ||||| || | |||| ||||||||||| | Sbjct 832 AGGTGCCGAGCAACTACGACCCGCAAACCCGTGTGTACAGCGGCGTGTGGGATGGCACCT 891 Query 33613 TTAAATGGGCGTGGACGGATAACCCGGCCTGGGTGTTTTACGACCTGGTGAT-CACTGAT 33671 | |||| || ||||| || |||||||||||| | | ||||||||| || | ||| | Sbjct 892 TCAAATCCGCCTGGACCGACAACCCGGCCTGGATCTACTACGACCTGCTGCTGCAC-CAG 950 Query 33672 CGCTTCGGACTCGGCGACCGGCTGGACGCCGATAACGTGGACAAATGGGCGCTCTACCAG 33731 |||| || |||||| || ||| |||||| | |||||||| |||| ||| |||| Sbjct 951 CGCTATGGCCTCGGCCACTTGCTCAACGCCGGCCAAGTGGACAAGTGGGAGCTGTACCGC 1010 Query 33732 GTGGCGCAATACTGCGATCAGATGGTGCCGGACGGCAGGGGCGGC 33776 | | || |||||||| ||| |||| |||| |||| ||||||| Sbjct 1011 ATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGGCAAGGGCGGC 1055 >seq3088057 Length=7030 Score = 120 bits (132), Expect = 7e-23 Identities = 214/310 (69%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 33593 CGGCACCTGGGATGGCACGTTTAAATGGGCGTGGACGGATAACCCGGCCTGGGTGTTTTA 33652 ||||| |||||| ||||| || ||| ||| | || | ||||| || ||||||||||| Sbjct 5608 CGGCATCTGGGACGGCACCTTCAAAGAGGCCTACACCAACAACCCTGCGTGGGTGTTTTA 5667 Query 33653 CGACCTGGTGAT-CACTGATCGCTTCGGACTCGGCGACCGGCTGGACGCCGATAACGTGG 33711 ||||||||| | ||| | || ||| |||||||| || | || ||| | || | Sbjct 5668 TGACCTGGTGCTGCACCCTTA-CTACGGCCTCGGCGATCGCATCGATGCCACGATGGTTG 5726 Query 33712 ACAAATGGGCGCTCTACCAGGTGGCGCAATACTGCGATCAGATGGTGCCGGACGGCAGGG 33771 | ||| |||| || | | ||||||||||||||||||||||||||||| || | | Sbjct 5727 ATCGCTGGTCGCTTTATCGCATCGCGCAATACTGCGATCAGATGGTGCCGGATGGAAAAG 5786 Query 33772 GCGGCGACGGCAAAGAGCCACGCTATATGTGCAACGTCTACGTGCAGAGCCGGGCCGACG 33831 | ||||| ||||| |||| || |||||| | ||| |||| | | |||||| | Sbjct 5787 G------CGGCATGGAGCCGCGCTTTACCTGCAACCTGTACCTGCAAAAGCAGGCCGAGG 5840 Query 33832 CATTCACGGTTTTGCGCGACTTTGCGGCCATCTTCCGGGGCATGACTTACTGGGGTGGCG 33891 | | | |||| ||| || | || | ||||| | || || | ||||||| ||| Sbjct 5841 CCTACGCGGTGCTGCAGGATCTGGCATCGATCTTTCACGGTCTGGCCTACTGGGACGGCA 5900 Query 33892 ATCAGCTCGT 33901 ||| |||| Sbjct 5901 GCCAGATCGT 5910 >seq277625 Length=52836 Score = 109 bits (120), Expect = 1e-19 Identities = 147/200 (74%), Gaps = 16/200 (8%) Strand=Plus/Minus Query 17930 GTTTCGACATCGTTTCGTGGCGGCACGCT---GCGCTATCTTCATGTGTCCGAGTTCGGG 17986 || ||||| ||||| || ||||||||||| |||| || ||||||||||||||||| Sbjct 29988 GTATCGACCTCGTTCCGGGGCGGCACGCTCCAGCGC---CTGCATGTGTCCGAGTTCGGC 29932 Query 17987 AAGATCTGC--GCAAAGTACCCGGACAAGGCGCGCGAAATTGTCACTGGTGCTTTTGAAG 18044 ||||||||| || || |||||||||||| | ||||| ||||| ||||| ||||| | Sbjct 29931 AAGATCTGCAAGCTGAG--CCCGGACAAGGCTCAGGAAATCGTCACCGGTGCGTTTGAGG 29874 Query 18045 CTGTTTCAACTG---ACTGTTTCACGACGATTGAAAGCACAGCAGAAGGCCGCGCGGGCT 18101 | || || || || || || ||||||||||| || || || || | |||| Sbjct 29873 CCGTGGGCCTTGGCAACCGTGTC---ACCATTGAAAGCACCGCCGAGGGGCGTGAAGGCT 29817 Query 18102 ATTTCTTCGATTATTGCCAG 18121 | |||||| |||||| || Sbjct 29816 ACTTCTTCACCTATTGCGAG 29797 >seq3088451 Length=13260 Score = 100 bits (110), Expect = 7e-17 Identities = 328/499 (66%), Gaps = 18/499 (4%) Strand=Plus/Plus Query 31333 TGGACGTCTGCAACGGTACGCTG---ACGGCCTGCAAGCTGCGATTTGGCGAGGCGCAGC 31389 ||||||| ||| ||| || ||| | || ||| | | ||| |||||||||| ||| | Sbjct 9681 TGGACGTGTGCGACGCCACCCTGGGTAAGGGCTGTATCCCGCGTTTTGGCGAGG-GCAAC 9739 Query 31390 CGCTCGACT-TCGGCGGATTCCCCGGCACCAGTCTGATCA---GGAGCTAAACATGGACG 31445 | || | | |||| |||||||||| | |||| |||||| |||||| | Sbjct 9740 CCCTTGCCAATCGGTGGATTCCCCGCCGTTTCCTTGATAGCTCGGAGCTGAACATGCGC- 9798 Query 31446 AAACAC-TGATTCAGGAGATTAAGCGGCACGCGGCGCAAACCTACCCGCAGGAGTGCTGC 31504 |||||| | ||| || ||| || ||| |||||| |||||| | ||||||||| Sbjct 9799 AAACACATCATTGCGGCCATTCAGGCGCATGCGGCGTCCGAGTACCCGAAAGAGTGCTGC 9858 Query 31505 GGGCTTGTCATTCTGCAGGACGGCCAGCCGCGT---TATCTCCCCTGCAGAAACACCGC- 31560 ||||| || ||| | ||||| | ||| ||| |||| ||| | |||| || Sbjct 9859 GGGCTG---ATACTGGCCGTCGGCCGGGCGCAGAAGTATTTCCCGTGCCGGAACATTGCC 9915 Query 31561 AGACAACCCGGCGGCGCATTTTCGCATCGCGCCGGAGGATTACGCCCGCGCCGAAGATCA 31620 | | || || | | || || ||| || ||||| |||||| || ||||| || Sbjct 9916 ACGGAGCCAAACGAAG-AGTTCCGGCTCGACCCCGAGGACTACGCCGCGGCGGAAGACCA 9974 Query 31621 GGGCGACGTGGTAGGCATCGTTCACAGCCACCCTGACGCCACCAGCCAGCCGAGCGAGCT 31680 |||| | ||| | |||||||| ||| || || ||||| |||||| |||| || Sbjct 9975 GGGCCAGGTGATTGGCATCGTCCACTCGCATCCGGACGCAACCAGCAGGCCGTCGTCGCG 10034 Query 31681 GGATAAGGCGCAGTGCGACGTTACAGAGCTGCCCTGGCATATCCTGAGCTGGCCCGAGGG 31740 || |||| ||| || | || |||||||||| || ||| |||||||||||| Sbjct 10035 AGACCTGGCGATGTGTGAGGCCACGACTTTGCCCTGGCACATTCTGTCCTGGCCCGAGGG 10094 Query 31741 CGATTTACGCACCATCTACCCGCGGGGTGAGCTGCCGCTGATTGGCCGCTCGTTTGTGCT 31800 ||| | ||||| ||| || || | ||||||| | | ||| | ||||||| Sbjct 10095 CGACCTGCGCACGATCACTCCAACCGGCAACACGCCGCTGCTGAGGCGCCCATTTGTGCA 10154 Query 31801 GGGCGTCTATGACTGCTGG 31819 || | | ||||||||| Sbjct 10155 TGGAGCATGGGACTGCTGG 10173 >seq3084832 Length=3091 Score = 96.9 bits (106), Expect = 9e-16 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 17930 GTTTCGACATCGTTTCGTGGCGGCACGCTGCGCTATCTTCATGTGTCCGAGTTCGGGAAG 17989 || ||||| ||||||||||| |||||||| | || |||||||| |||||||| ||| Sbjct 2438 GTGTCGACGTCGTTTCGTGGTGGCACGCTCCAGCGGCTGCATGTGTCGGAGTTCGGCAAG 2497 Query 17990 ATCTGCGCAAAGTACCCGGACAAGGCGCGCGAAATTGTCACTGGTGCTTTTGAAGCTGTT 18049 || ||| | | |||||||||||| | ||||| ||||| ||||| ||||| || | | Sbjct 2498 ATATGCAAACTGAGCCCGGACAAGGCTCAGGAAATCGTCACCGGTGCGTTTGAGGC-GGT 2556 Query 18050 TCAACTGACTGTTTCACG--ACGATTGAAAGCACAGCAGAAGGCCGCGCGGGCTATTTCT 18107 | ||| | || | || || ||||| || || || ||||| | ||| || |||| Sbjct 2557 TGGCCTG-GGGAATCGGGTCACAATCGAAAGTACCGCCGAGGGCCGTGAGGGTTACTTCT 2615 Query 18108 TCGATTATTGCCAG 18121 || |||||| || Sbjct 2616 TCACCTATTGCGAG 2629 >seq3086781 Length=4259 Score = 91.5 bits (100), Expect = 4e-14 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 33708 GTGGACAAATGGGCGCTCTACCAGGTGGCGCAATACTGCGATCAGATGGTGCCGGACGGC 33767 || ||||| |||| ||| || | | | |||| |||||||| || ||||||||||||| Sbjct 1611 GTCGACAAGTGGGAGCTTTATCGGATCTCGCAGTACTGCGACCAACTGGTGCCGGACGGG 1552 Query 33768 AGGGGCGGCGACGGCAAAGAGCCACGCTATATGTGCAACGTCTACGTGCAGAGCCGGGCC 33827 | ||||||| | | |||| |||| || ||||| | || |||| || |||| Sbjct 1551 AAGGGCGGCCAGG------AGCCGCGCTTCATCTGCAATCTGAACTTGCAAAGTAAGGCC 1498 Query 33828 GACGCATTCACGGTTTTGCGCGACTTTGCGGCCATCTTCCGGGGCATGACTTACTGGGGT 33887 || || | | | |||| ||| | | ||||| | |||||||||||| ||||||| | Sbjct 1497 GATGCCTGGTCTCTGCTGCGTGACATCTCAGCCATTTACCGGGGCATGACCTACTGGGCT 1438 Query 33888 GGCGATCAGCTCGTTACGCTGGCAGACATGCCGCG 33922 | || || | || |||| ||||||||||| Sbjct 1437 CAGGGCCAAGTCTTCACCTTGGCGGACATGCCGCG 1403 >seq347631 Length=610 Score = 91.5 bits (100), Expect = 4e-14 Identities = 172/254 (68%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 33736 CGCAATACTGCGATCAGATGGTGCCGGACGGCAGGGGCGGCGACGGCAAAGAGCCACGCT 33795 |||| || ||||| || |||||||||||||| | ||| ||| | | |||| |||| Sbjct 268 CGCAGTATTGCGACCAAATGGTGCCGGACGGAAAGGGTGGCCAGG------AGCCGCGCT 215 Query 33796 ATATGTGCAACGTCTACGTGCAGAGCCGGGCCGACGCATTCACGGTTTTGCGCGACTTTG 33855 || |||||| | || |||||||| ||| || || | || | |||||||| | Sbjct 214 TCATCTGCAACTTGAACCTGCAGAGCAAGGCTGATGCCTGGTCGCTGCTGCGCGACATCT 155 Query 33856 CGGCCATCTTCCGGGGCATGACTTACTGGGGTGGCGATCAGCTCGTTACGCTGGCAGACA 33915 | | |||| |||||||||||||||||||| | || | |||| ||| | || | Sbjct 154 CATCGATCTACCGGGGCATGACTTACTGGGCCCAGGGCCAAGTTTTTACCCTGTCGGATA 95 Query 33916 TGCCGCGC------GATGTTGATTATGTCTACACGCGCGCGAATGTGGTTGAAGGGCGCT 33969 |||||||| || | || | | ||||| ||||| || ||| | || || | Sbjct 94 TGCCGCGCGCCACGGACTTCGACTTCGCTTACACCCGCGCAAACGTGATCGATGGCAAGT 35 Query 33970 TCACTTACGCCAGC 33983 |||| ||| ||||| Sbjct 34 TCACCTACTCCAGC 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123108174538752